Detail information of GWHGAAEX007922/evm.TU.scaffold_208.11
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|392404976|ref|YP_006441588.1| | 1.00E-12 | C-5 sterol desaturase [Turneriella parva DSM 21527] |
| KOG | KOG0872 | 1.00E-148 | Sterol C5 desaturase |
| nr | gi|695008647|ref|XP_009390925.1| | 6.14E-158 | PREDICTED: delta(7)-sterol-C5(6)-desaturase-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9ZT29|SC5D_TOBAC | 5.00E-153 | Delta(7)-sterol-C5(6)-desaturase |
| trEMBL | tr|M0SAW7|M0SAW7_MUSAM | 2.00E-158 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P01490_001} |
| TAIR | AT3G02580 | 1.00E-148 | sterol 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000209 | 184249 | 203158 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007922
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04116.12 | FA_hydroxylase | 132 | 261 | 4.20E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00227 | SC5DL, ERG3 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Biosynthesis of antibiotics | map01130 | ||
| Steroid biosynthesis | map00100 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008610 | Biological Process | lipid biosynthetic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0005506 | Molecular Function | iron ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 44.200 |
| SRR2545915 | Juvenile tuber | 41.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 46.170 |
| SRR5643514 | five period of Gastrodia elata | 40.850 | |
| SRR5643515 | five period of Gastrodia elata | 45.300 | |
| SRR5643524 | five period of Gastrodia elata | 43.620 | |
| SRR5643525 | five period of Gastrodia elata | 59.790 | |
| SRR5643528 | five period of Gastrodia elata | 69.310 | |
| SRR5643658 | five period of Gastrodia elata | 78.220 | |
| SRR5643659 | five period of Gastrodia elata | 44.570 | |
| SRR5643660 | five period of Gastrodia elata | 47.370 | |
| SRR5643661 | five period of Gastrodia elata | 45.100 | |
| SRR5643662 | five period of Gastrodia elata | 49.960 | |
| SRR5643663 | five period of Gastrodia elata | 44.680 | |
| SRR5643664 | five period of Gastrodia elata | 47.040 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 37.530 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 44.750 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 42.870 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 49.180 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 42.570 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 45.160 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 43.360 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 41.130 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 35.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 39.470 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 42.090 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 42.090 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 53.29 |
| Juven | Juvenile tuber | 51.15 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 46.35 | |
| Mother_Juven | Mother tuber of Juvenile | 49.60 |