Detail information of GWHGAAEX007927/evm.TU.scaffold_208.17
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|563711425|ref|YP_008872203.1| | 7.00E-11 | RNP-1 like protein RNA-binding protein [Candidatus Saccharibacteria bacterium RAAC3_TM7_1] |
| KOG | KOG0123 | 0 | Polyadenylate-binding protein (RRM superfamily) |
| nr | gi|719970147|ref|XP_010270536.1| | 0 | PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Nelumbo nucifera] |
| Swissprot | tr|P42731|PABP2_ARATH | 0 | Polyadenylate-binding protein 2 |
| trEMBL | tr|M5XRJ2|M5XRJ2_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ28161.1} |
| TAIR | AT4G34110 | 0 | poly(A) binding protein 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000209 | 296768 | 316158 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007927
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 37 | 107 | 3.40E-19 |
| PF00076.21 | RRM_1 | 125 | 193 | 6.90E-21 |
| PF00076.21 | RRM_1 | 216 | 284 | 2.00E-21 |
| PF00076.21 | RRM_1 | 319 | 387 | 3.30E-19 |
| PF00658.17 | PABP | 528 | 594 | 8.30E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13126 | PABPC | RNA transport | map03013 |
| mRNA surveillance pathway | map03015 | ||
| RNA degradation | map03018 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003723 | Molecular Function | RNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 60.520 |
| SRR2545915 | Juvenile tuber | 97.340 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 113.020 |
| SRR5643514 | five period of Gastrodia elata | 130.110 | |
| SRR5643515 | five period of Gastrodia elata | 116.130 | |
| SRR5643524 | five period of Gastrodia elata | 123.500 | |
| SRR5643525 | five period of Gastrodia elata | 114.230 | |
| SRR5643528 | five period of Gastrodia elata | 134.370 | |
| SRR5643658 | five period of Gastrodia elata | 120.880 | |
| SRR5643659 | five period of Gastrodia elata | 135.520 | |
| SRR5643660 | five period of Gastrodia elata | 138.290 | |
| SRR5643661 | five period of Gastrodia elata | 137.540 | |
| SRR5643662 | five period of Gastrodia elata | 152.570 | |
| SRR5643663 | five period of Gastrodia elata | 159.060 | |
| SRR5643664 | five period of Gastrodia elata | 164.630 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 136.760 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 94.730 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 145.960 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 132.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 147.050 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 149.270 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 141.470 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 150.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 155.460 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 151.640 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 162.010 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 162.010 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 150.17 |
| Juven | Juvenile tuber | 106.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 150.09 | |
| Mother_Juven | Mother tuber of Juvenile | 104.64 |