Gene detail

Detail information of GWHGAAEX007929/evm.TU.scaffold_208.20

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|88604358\|ref\|YP_504536.1\|	7.00E-34	peptidase C1A, papain [Methanospirillum hungatei JF-1]
KOG	KOG1543	7.00E-143	Cysteine proteinase Cathepsin L
nr	gi\|226496089\|ref\|NP_001149658.1\|	1.80E-147	cysteine protease 1 precursor [Zea mays]
Swissprot	tr\|P25776\|ORYA_ORYSJ	4.00E-149	Oryzain alpha chain (Precursor)
trEMBL	tr\|F2CQM4\|F2CQM4_HORVD	2.00E-148	Predicted protein {ECO:0000313\|EMBL:BAJ85145.1}
TAIR	AT1G47128_1	7.00E-143	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000209	347930	354309	+

Transcript Sequence
>GWHTAAEX007929 AGATCATTAAATAATATATTGTAGATTGTGAGATTTGAACTCAGCAGCTCTAATCTAATTTTAAAAAGAAATTAATTTGGCCCTTTAATCCGCTAACCTCCATAAGCACATGTGAATGCCAGTTTAAGTATTCGCAGATCTCATGAGCTCGATCAGAGCGATCTTTGTAGTACTCTTCTTGTCCGCCATCGCCGCCGGCGCCTCCTTTCCGGTGTCGCCGAAGCGCAGGGAGGAAGAGACAAGGTTAATGTACGAGGCCTGGCTGCAAGAAAACAGAAAACCCTACGATTCCTTGAGCGAGAAAGAGCGCCGGTTTGAGATCTTCAGGGATAACCTCCATTACATCGACGAGCACAATGTCTGGGGAAACCACACCTATCGCTTGGGACTCAATCGCTTTGCTGATCTCACCAACGTTGAATACCGAGCTCAGTTCCTCGGCCTCCTCTCCTCCTTCCGCCGTCGACGGCTAACAAGACACCCCTACCTTGTAGCCGACGGAGATTCGCTGCCGGAGTTCGTTGATTGGAGGAATAAAGGCGCTGTTGGCCCCATCAAAGACCAGGGCAGCTGCGGCAGTGGCTGGGCTTTTTCCGCGACGGCGGCAGTGGAGGGTATTAACCGGATCGTAACTGGAAACTTCATCTCTCTGTCGGAGCAGGAGCTAGTGGACTGCGATAGAGGCTTCAACGAGGGATGCAATGGTGGTCTCATGGATTATGCCTTCGAGTTCATCATTAACAATGGCGGTATTGATACCGAGGTGCACTACCCTTATTACGGAAGGGACGGCCAGTGTGATCTTAACAAGGAAAAAGTGTGCGCTGTTAGTATTGATGATTATGAAGATGTGCTGAGTAGCAATGAGAAAATTTTGAAGAAAGCTGTGGCAAACCAGCCGGTCAGTGCCTCTGTTGAAGGCAGCGGCAGGAATTTCCAGCTTTATGAGTCGGGGATCTTCTCTGGTGCGTGCGGCAATCATGCTGACCATGGTGTCACCATTGTGGGTTATGGCTCTGAGAATGGCAAGGATTACTGGATTGTTCGCAACTCTTGGGGCAAGTCTTGGGGAGAGGATGGATATATCAGAATAGTTCGCAATGTATACTCTCCTTATGGCAAGTGCGGCATCGCAATGGAGGCTTCCTACCCCATTAAGAACAGCCCTAATCCTCCTTTCTCCGTACCATTTCCTTCTTTGGCAGTAAGTTTCTCATCTGTCTCTGATAACCACGACAATTCCCAATGCCATTGAAATCTCCTTGCAAAGTATGCTCCTTAATAACTTCACGATTAAAGGAGAAACAAAGAGATCATAATTCATTAATTTATAAGTTATTTGGAAGGATTTTGCAGAAGAATGAGATTTTAAGAAGCATAGAGAACTGTTAGTCATTGGAACTGCCTTGTGTAATAATGCATAATTTTAAATTTTAGCAGTTAGATTCTTCTCGCAACAACGACAACAACAATGAATCTCTTACAGAAACTAACCCTTAACCACATTTGGTTCCACATCCAACCGCCACATTTGGTTCCACAATCTAACCGCACATTCGGGTTTCACATCCAACTGCCTTAGGCTATATAGGACCTGCATTGAACATCATGTGTTAATGTGAATATATTGATTTCTCTAGACTATTCTTTTCCTCTTTACGTGGTTGCTCCTTCTGTCTCTTCGATCCATTATCAATGACGGGCTCCACCGCCATCTTTGATGGAACATCTGCAAACGGTTCGAGAATCGATTCAGAACTCCTGATTCCAGAAAGATTGCTGTTCTTAGTGAGCAACGTACAAAGTAACTTCACCATCCCCTCAACGTTGAGAATTATTCGCTATGGAAAGCCCAAATTTGCAAGCTATTCATTGCATATCAATAACAAGGACACCTCAATGGTACTGATCCCGCATCAGATCGCTTCATCCAAGACAGTAACAATCAATGGCTTCTTATTGACCAGAACCTCGCCGCAGCCCTATTCTCCATAATATCAAATTCTTTCACTTGTCATCCATCTTGACAGATACTCGGAGATTTGGATTATTCTTGAATCCCGTTTGCAATTCACCTACAGATAAAAAACTATACAGTTGAAGAATGAGCTCCTCCACTTCTCTATGCACGGCAAAAGCTTGACTCAATATCTCACCAAAATCAAAGCCAAGGTGGATCAAATCGCTGCCTCCGGAGCCAAATTGGATCTCGAAGATGTAGTCTTCTATACCTTGCATGGGCTACCATCCTTAGATCAATCTTTCAAAACTGACATTAGAACAAAACCTGGCTCCATAGGACTTGATGAGTTTGACTTTCTCCTTTGTGAGGAGATCAATCTTTAAACTGAGTCTCAGCAACCTACAACATCTCCACCTCACCTACCCTGCAACAACCCTCCCTGCCCCTTGGGATCTAGGCCACAGCCATTTCAATAGGGGGCGTGGCAACCAAATTCCTCAATACAACTCTAGCCGAAACACTCCATATGCAAACTGAGACACCAACCGGGAAACCATGAATTGCCAACTTTGTGAAGTTTTTTTTTGGCACTGATAGGATTACATTCCGAACACGGATTGAGCCTTCATTTTCGATACAAAACTGTGGAGCCCCAACCCTTTCGTGATCATGTTAACACTTATATTAACATGAATACGGTAGAGTGATCACCGTGACAAATTCTTAATTATAGTCAGATAAGATTTTCTCTCTAATCTGTAGATAACTGCAGAATTTGCCACCTGTTCCTATAATTCATTCATCAAATATGTGTACTTAAATAACAAAGTGCGGAAGCAAAGTATAAAACATCCATATCAATAATGCATAAGTAAAAGAATATAGTTCAGCTCAGAATAAAAGTACAAAAAAATAAATACATCCAGATCCTGAATTATTATAACATTTGAATAAAGTTCAACTGAAAGGAAACACTCATCCTCACAA

Network for GWHGAAEX007929

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08246.11	Inhibitor_I29	37	94	3.90E-15
PF00112.22	Peptidase_C1	123	338	2.30E-80

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	Biological Process	proteolysis
GO:0008234	Molecular Function	cysteine-type peptidase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	14.900
SRP064423	SRR2545915	Juvenile tuber	31.020
SRP108465	SRR5643513	five period of Gastrodia elata	25.870
	SRR5643514	five period of Gastrodia elata	21.750
	SRR5643515	five period of Gastrodia elata	30.070
	SRR5643524	five period of Gastrodia elata	21.890
	SRR5643525	five period of Gastrodia elata	10.810
	SRR5643528	five period of Gastrodia elata	11.950
	SRR5643658	five period of Gastrodia elata	11.370
	SRR5643659	five period of Gastrodia elata	41.920
	SRR5643660	five period of Gastrodia elata	30.860
	SRR5643661	five period of Gastrodia elata	40.030
	SRR5643662	five period of Gastrodia elata	24.990
	SRR5643663	five period of Gastrodia elata	27.300
	SRR5643664	five period of Gastrodia elata	20.750
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	30.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.480
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	29.830
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.770
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	23.390
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	20.290
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	28.030
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.140
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.900
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	36.860
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	27.560
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	27.560
SRP279888	Gastro	Gastrodia elata tuber	23.73
	Juven	Juvenile tuber	30.57
	Mother_Gastro	Mother tuber of Gastrodia elata	12.33
	Mother_Juven	Mother tuber of Juvenile	12.15