Gene detail

Detail information of GWHGAAEX007933/evm.TU.scaffold_208.25

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0048	8.00E-80	Transcription factor, Myb superfamily
nr	gi\|743808649\|ref\|XP_010928389.1\|	4.46E-105	PREDICTED: transcription factor MYB44-like [Elaeis guineensis]
Swissprot	tr\|Q9FDW1\|MYB44_ARATH	2.00E-80	Transcription factor MYB44
trEMBL	tr\|K0A224\|K0A224_ELAGV	1.00E-104	Sucrose responsive element-binding protein {ECO:0000313\|EMBL:AFS65096.1}
TAIR	AT5G67300	8.00E-80	myb domain protein r1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000209	447060	448632	+

Transcript Sequence
>GWHTAAEX007933 TTATACTGTAATATTGCTTGTATTTATTATACTTTCTTTGTGAATTAGAATACAAATAAGATTGGTCAGAAAAGGGTAACATATTAGCTAACCGCCCCTCCTCTCACATTCATTCGTTCATATGGAGGGGGAAACGGCCGTGAAACGGGTAATAACCGAAGATTCGTTCCGTACGGTAATTAATCAATGAGAAGGACGATTATTGGCCCGAATTGCAGGCGCTTGCCCAAACAATTCTGTATTTAGTTTTAGAAATAATTTGCAGGCGTTATTTTGCACCGCGCGATGAGTTTGCGGCAATATATGCAAATACCGGAAAGTAGAGGAAATAAATCTGCAAACGGCCCCTGCTGCGCGCGTCTTAGTGCCAGCTGTACGCAATCAACTGCCTACCGGCAAGCGCCCAGTGCAACGGCCCATAATCGGTCATACCACCGGCTGCCACCGGTCTCCCTTCCCCCTTATAAATCACCCATCCCTCTTTCTCTCCCCGTCGTCCTCCCCTCCCAACCCTTCCGAACCTCCCCGACACCCAATTCAGTCATTGAGAGAAAGCGCTGTTGGAAATCGTACGCGCGTACCTCGATCGAAAGGCATGGCTGCGAAGAGCAGAGATGTGGATCGGATCAAGGGGCCTTGGAGCCCCGAAGAGGACGAGATGCTGCAGAGGCTTGTTGTGAAGCACGGGGCCAGGAACTGGTCTCTGATAAGCAAATCGATCCCGGGCAGATCAGGCAAGTCTTGCCGGCTTCGATGGTGCAATCAGCTCTCTCCGACGGTGGAGCACCGCCCCTTCACGCCGGAGGAGGATATGACCATCATCAGCGCACACCAGCGCTTCGGGAACAAGTGGGCGACCATCGCTCGGCTCCTCAATGGCCGCACTGACAACGCCATTAAGAATCACTGGAACTCCACCCTCAAGCGAAAGTACTCCCCCTCCGAGGACGGACGGATTCCCAAGTCCTCAAACAGCGCCGGAATCTGCTTCAGCCCCGGGAGCCCGGCTTCCTCCGACCTCAGCGATTCTAGCAATCACAGTCATCCGCTGGCCGCCACGGTGTACCGTCCCGTGCCTAGGGCTGCGTGCATCGTCCCCCAAATCGCTCCGTTGCAGATCCCTCCTGCTATTGATCCTGCCGCCTCCAACTCTAGCGGAAGCTGTAGCGACATGGCCTCAGATCCCATGACTTCCCTCACTCTCTCCCTCCCTGGATTGGCGGCATCCGACCAATCTGAAGCCTCCGATCACCGTTACTGGCAGAGCCAGAGCGGATGCCTGAATCTGGTTCCCCCTGCAGCTGGAGGCGAAGATCCGCCTGAAAAGCATTCTCCAGCGACTCACCCCTTCAGCGCTGATTTTCTTTCGGTGATGCAAGAGATGATCCGGCAAGAAGTTAGGAGCTATATGAGCGGCATGGAGCAGAGAGGGATTCCTTGCCCGTCTCAGACGCCGGAGACCGTACGGAACGCTGCCATGGAAAGGATCGGGATCGCTAAGGTCGATTAGGGTAGGCTGTATGTAGAATCGTCTTTCCTATCAAATTCGTAGCTTTTTTTTTTTTTTTTTTTT

Network for GWHGAAEX007933

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module13

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	12	57	3.00E-18
PF00249.30	Myb_DNA-binding	66	108	6.50E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	133.910
SRP064423	SRR2545915	Juvenile tuber	48.170
SRP108465	SRR5643513	five period of Gastrodia elata	112.650
	SRR5643514	five period of Gastrodia elata	94.990
	SRR5643515	five period of Gastrodia elata	187.040
	SRR5643524	five period of Gastrodia elata	92.480
	SRR5643525	five period of Gastrodia elata	130.620
	SRR5643528	five period of Gastrodia elata	74.970
	SRR5643658	five period of Gastrodia elata	51.560
	SRR5643659	five period of Gastrodia elata	316.740
	SRR5643660	five period of Gastrodia elata	318.460
	SRR5643661	five period of Gastrodia elata	273.800
	SRR5643662	five period of Gastrodia elata	153.970
	SRR5643663	five period of Gastrodia elata	219.890
	SRR5643664	five period of Gastrodia elata	274.350
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	322.960
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	297.470
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	285.220
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	294.210
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	214.570
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	263.920
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	350.820
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	196.320
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	188.580
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	336.010
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	188.210
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	188.210
SRP279888	Gastro	Gastrodia elata tuber	174.03
	Juven	Juvenile tuber	58.04
	Mother_Gastro	Mother tuber of Gastrodia elata	159.44
	Mother_Juven	Mother tuber of Juvenile	53.63