Gene detail

Detail information of GWHGAAEX007934/evm.TU.scaffold_208.26

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1492	1.00E-126	C3H1-type Zn-finger protein
nr	gi\|743861176\|ref\|XP_010943206.1\|	0	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105060998 [Elaeis guineensis]
Swissprot	tr\|Q3ED78\|C3H7_ARATH	4.00E-132	Zinc finger CCCH domain-containing protein 7
trEMBL	tr\|F6H0H6\|F6H0H6_VITVI	4.00E-167	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45448.1}
TAIR	AT1G21570	1.00E-126	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000209	481886	523005	+

Transcript Sequence
>GWHTAAEX007934 ATGGTACCGGGAAGTCGAGACCCTAAGCTCGTCAATCATCTCAGGCATGTAGGCAGCCCTAAGGACGAGCGATTTGAGACTCGAGCTTTTACTTTTCTTAGCTACGGGCGTCAGGCCGCGGGCTCCTCTTACATGGATCCTCTCGGTTCTCCGCGTTTAGGCCGTCGGGCGAGGTACGATTCTTTCCACTCTCCCTTACACTTTTCCGATCCCAACCCTAATCTCCATCGCCATCCACCTTCGGTCTTTTTTCGACCTCATCCGGCAATCCCTCGGGATCACTATCATGATTCCCGGCCAGTCTATCCTATCGGTGATTTTTCGTACATCCACTCTCTGCACCGCACAAATCACTCCGGGCTTGATACCAGGCCTTTCCCTTTTCAAAGGGTCCCTGATCGCGCTATTCACCACGGTCTATCTGGCGTCAATTCATTGCTGCCCGAGCCCTGGGAGCGGGGCCAAGACGGAGGTGTCACTATCGATGTTCCCGGGGTGTTTGATGGGAGGTCTGATCTGTTCCGCCCTTGTGATGATTTACTTAAAATTGAAGGCAGCGATCCAAGTGTAGTTGCCAGGAGAAGGTTGGTGTCTGAGAAAGAGCACTTTTTGGGCGAGAATTCTGAATGGAATAATCGACATCATTTTAGGTTATGGGATGAACGACCGAGCCGTTACCATAACCGCTTCCTTGCGCAACTGCAGCCAGAAATTGCTCCTTTGGAAACAGTTTCGTTATTTTTTCCCCCTCCAGTAGGAATTCATGGTGCTGGTTCAGTTAAAATTGGAGGGGGAGAGCCTTCTAGTGATTTAAATTATGAATCCCCTCTTAGGTTGCCTTTTACGTCTTGCCGTTTCTCTCCTGATGTGAACGTAATTAAGAGCACTGCTGCCCAGATATTTGGAAATGAACCTCTCTCCAAACGGTTACAGTCTCCCAAAAAAAATAATGATTGCAATTTTGGTAGGAGACAATATGTGGGACATAAAGCAATCAAGAAGTTTGATCCTGTTAATCCGGGGCATAAAGTAATTAAGAAATCTGATTCCATTAATGTTACTAAAGAAGTCGATTTTTGGAGCAGTCGCCATATGGTAAGGAAAACGTCTAGCATATTGGCTACAGACTATGAACATGGATTTGGAGAAGGTTGCTCCACTAGTTACAATGGTAAGAGGAAGATGCTCAATAGTAGGAGTGCTAAATACAATACACATTTGGAAAATCAGTCTATGCAGAAGCCCATTGCATTTCTTAAGAAACAAAGTGGATTATCTGTATGGGATAGGTTAGAGGAAAAACCATTGATCTTTCCTCCCCATAGTTCCTCTTCATGTCAGCTATCTTCATCTCCTAGGATTTCAAATGAAACTGAATTTAATTCTGAGAATGTTAACCTCTCATTTAAGTCAAATTTGCTGGTTGCCAAGATTGTAGATCCTTCGATTGTTGAGCCAAGCTCCATTGAAAATGATGTTATTGTTGAAAAGCTTAACACAGCATTGAAAAAAAAGAATATGAATCGGATGAGGGAAAAAGTGATAATTCCAATTGTTTCAAGTTCACTTGGCTCTAGTGCAGAGCATAATAAAATTAGAAAGAAGAAGAAGAAGAAAACATTACAATTGAGGGAAAAAGTGGTGATTCCTATTATTCCAAGTTCCAGTGACACTAGTGCAAACCAAAGCATTAAGAAAAATTCTGATGTAAGCAATATTGGAAATGCTTCAGTGCTCGCTGATGCAAAAAATGAAATAGTTCTCTCATTTACACCAGGTAGCAAATCTTTGTCCAATGCTGGCGTAAAGAAGGCCAAGGAACTGGTTGCAGCTAAAATGATTGGTGTCAAAGAAGATGCTGAGGTGTTTAGTCTAGTGGAAGGCTGCATTATTGAGACACCAAGGATGAATGATGATACAGAGTATTCCAAGTATGAGAGTGGCGTTGACTGCGCAAAGGAGATGAATAATTGCACTCACATTGGTGATACTGAAAATGAGCCCATTGTCATTATTGATGATAGCAGTTTGCAGATGTGTCAAAAATTTCAGATGCTGCATGAGACTCCAGCTAATGATGTCAGTGCTAGCATTATTACAAAGGATAGTCAAACACAAGGTATTGTCATTGAGATTCTTGATGACAGTGGTGAAGAAGAACAACTGGAGCCAGTGAAGAAATTGGATAACAAATGCAAAAGTTTGTTGGATTCTGATGTTAATGTTACATCAATGCCTCATGAGTGCATCATAGATAATGTAGTTGCTCAGGATTCCACAGTGGATATGTACGGAACTGATTTTGCGGATTCAAGCAAGCAAATCAAGTCTGAATTGAATGTTCTTGTAAATTCTCTTTCTTGGAAATTTGGGCAATACATGTCGCAATCTGATGATGCTGCATCGGCTGAATTGCTATCTAGTGGAGAAGTTTTTGTGTCAGCGTGTTCCAAAACTCACTGTAGTGATAATTCTCTCAAGTGCAATAGCACTGAAATAGGAATAGAGACAGAAGAAGTAAAGCATCATCGGGAGAAAGTGTTGCTTATTACAGCTACTGAGGAAGTGGTTCCCGGAGATGGTACCTCTTCACAATCTGGTATTCAAGGCATCCGAACACCTTTATTTTCAGAAACCAGTAATGCTCCTCTGAATCTGGGATTACCTAGTGATGGAACTGTTCAAGAAAGTATCATGCCACTTCTATCTGGATGTAATAATACCATTCGGGACACCTTAGATACTCTCACGATTGATCCCAGCAGAAAAGCAACTGAGCATACTTTACTATTGGGACCCACACGCAAGGTTTGCCCAGCTCTACATTTAGAAAATTTATCTCATTCTCCAGAGGTTTCTGAGAGCATGGATTTCTGTAGCAATGCTGATGATAGCAACACAATTCAAGAACACATATGTAACGGTGAGGCTTCTGTGAGCACTATGAAATCGTCAGCTGTGAAATCTGGTTTTAAATTAGGTAAACTTATAAAGAGCCATCAGTTTTTGTCTAATAAATCAGATATCTTACCAGCCAATGAACCTAAAAAACAAGTACCTCCAAATCCTAAAATAGCAGATGCAGAGCTCTCCTGTGACAAAAATGTACGTCATGCTAATGTCTCAAGAAGTATATCCAGAAGGCTGAACTACTCCAGTTTACTCAAAGTAGCATCACGTACAGGTCAAACTGGGAGGCATAGGACATGGCTTCGTACTAATGCCCCTTCTTTACACTCTTTAGACGAAGTTCCAAAACCAGGAGGTTTTTTAAGTGAACAAACAACTAAAAAGCCTGAAAAAATTCAAAATACATCGTATTTTCGTAAAGGTAATAGTCTTATACGGAAACTAGCTGCTGAACCGCCTCCTGTGCTCCTTCAAACTGTTGGTGCATCAAGCAGAAAAGTTAAATTTATAGCAGAGAGCAGTGTGAAGGAAAGTAGAAGTGAATGCCAGGATAATGCAGCACCTTCTCATCCTTTACTTGAAAGACCAGATACTCTTCCTTTACCACCTCTTTCCAATTACCCTGGCGTTACCATGAATTCTCATAAAGATTGCCCTCAACTCTTACCAGCGGATAGAAGCCTTGAACCGGGTACAGATCAAGGAAATCAACATGATAATCAATCAAGGGGCTTATTTTCTGGCAATTTGGAGAGCCAAGATTCTGCAAGTCGCAAAACAGTTGAAAGTGTAAATGAAAAGAAGGTAACTATAGTCAAACACAAGGTAAACCAGTTGGTTGCTGCTCCAGGGCCTGAGAATGGTGATTCCTCTAAGCTATTTACAGAGAAAATTAAGTTTTCTGCACTAAATTCTTCAGAACGGTCAAAGATTGTACCTGTTTCTTCGTCTTATTTGTACTACAGAAGTAAAAGGAATCAACTTATTCGGAATGCAACACCTTCTAATAGCAAGCTAACAGGAATCCCTGACAGTAAAACAGATTCAGTTGATTCCCTTCAAAACAGGAAAACTAATTTTTCAAAGAAGAGGCTAGATAATGTTCTTCATAAAGCCAAAAAATTAGCAAGATCTTCTCGTGTGTGGACGTTGTGTGGGAACAAACTATCCCAATCATCTTTGGGTTTCCAGAGCATTTTTCCATACATCCTTCTATGGAAAAGAGCGGTATACTGGAAGAGCTTTATAAAAACTGGCAACAATCCCATTTCAAGATCCTCATCATCATGGATCAGCCGGAAATTGAAATCTCTGAAGAAAAGGGATACAATCTACAAAGTATCAACCAATGGCTTCTCTCTTAGAAAAGCTGGAGTTGTAAGTATCGGGGGATCTAGTCTGAAGTGGTCAAAATCCATTGAAAAACATTCGAAGAAGGCCAATGAGGAAGCTACTTTGGCAGTTGCTGAAGTGGAGAGAAAAAAACGAGAGAGGAAGAGGAGTAAATCTACCTGCGGTGATGGGAGGAACAAAGTTGGTTTATCCTGCAAATCAATTGCTGGTGTTGAGCTAAAACAAGGGGAAAGTATATTTCGTGTTGGTTCAGCGCGATATAAAATGGAGTCATCTAAGCGAACATTGATAAGGATACCAGATGACCTTACATCATCTTTTGCGAGCCAGCAACCAGGCAACAAGAATCGACTATCTTTTGAACCAAAAAGAGTGCTCATTGGCAATCACGAATATGTTCAAATTGGAAATGGCAATCAGCTTGTTAGAGACCCAAAGAAATTTAAACTTATTTTAGCAAATGAAAAAGTACGCTGGAGTTTACACACAGCTAGGCTAAGATTGGCCCAGAAACGTCAGTATTGCCTATTTTTTGCAAGGTTTGGCAAGTGCAATGGAAGAAATTGTCCCTATATTCATGACGTCACTAAGGTTGCCATCTGTAGAAAATTTCTTAAAGACCAATGTTTCGACGTGAAGTGCAAGTTAACACATAAGTTTATTCCAGAAAGAATGCCAGATTGTTCATACTTTCTGAAAGGATTATGTACCAACTTAAATTGCCCTTATAGGCATGTAAAGGTCAATTCTACTGCCGCTTTATGTGATGGTTTTCTCCGAGGACATTGTACAGATGCTGATAAGTGTTGTAAGAAGCATAGCTACACATGCCCTCTTTTTGAAGCAACAGGAAAATGCCCTCAAGGATATCTTTGCAAGCTTCATCATCCCAAAACCCGAAGCAAGACTAGAAAAAGGAAACGAACTAAGATTCAAAACAGCAGCCCACAACGTTACTTCTATTCGAGCATTGACAAAGGTACTGAACCTCTAAGGGTATCCTCAAGTCTAAGCGATTTGAAAGATGGCAATGACATCTTCTGTTCTGATGGACGATTTACTGAATATATCAGTCTTGATGTTGAGAGTGATGATGATGGCATGAAAAATGCTCTTATGGACTCTTATCTGGGAAAGTGGAACCCAGGTTATCTTGATATACAGTCATGCGATGCAAATGTTCACATTAAGCCTATTCGAATCATGAACAGGGATGACCTGACCATTCTTTAATCTTTCTATGATAGCCTTTCATTCTTATAACCTGTTCAAGTATTGCTTTTGCTGTTTTTTTCTGCTGTCTTGCTTTTATCTCAGGTTCATGAGTTGGTTGTGAAGTTCAAAGTCTTCTGTTTAAAGCTGCTGCCAGCACCTGCATACCGGAAATAGGAAGGCGTACTTCAGTATTGTTGGCTTGGTTTTCTCTTTAGGAGCTTCTGGCTTATTTCAACTAAATTTTTTTTACTGATGATAGGCTCTGCAGGGCGTTTGGGGAGTTGAAGAAACAGGGCTCTGCACCCATCCACATGCCTGTCAGCAAGTGAATTTCTTCTTAGTCCCAATTAGAGGTTAGATAGTTTCATAGGAAAACACTTGTAATGCTCAACACGAATGGATATACTGTGAATTTTGTAACATTTTATCTTGTATGATGTATTTAGTTGTTTCTACAGTCATTGAAAATGTTGAGGGAAAAAAATGCAAGTTTCTATAGTAATTATCCGTTGTTTTATCTTTGCATTGTGAATCCTCACATCATCCAA

Network for GWHGAAEX007934

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX007934
MVPGSRDPKLVNHLRHVGSPKDERFETRAFTFLSYGRQAAGSSYMDPLGSPRLGRRARYDSFHSPLHFSDPNPNLHRHPPSVFFRPHPAIPRDHYHDSRPVYPIGDFSYIHSLHRTNHSGLDTRPFPFQRVPDRAIHHGLSGVNSLLPEPWERGQDGGVTIDVPGVFDGRSDLFRPCDDLLKIEGSDPSVVARRRLVSEKEHFLGENSEWNNRHHFRLWDERPSRYHNRFLAQLQPEIAPLETVSLFFPPPVGIHGAGSVKIGGGEPSSDLNYESPLRLPFTSCRFSPDVNVIKSTAAQIFGNEPLSKRLQSPKKNNDCNFGRRQYVGHKAIKKFDPVNPGHKVIKKSDSINVTKEVDFWSSRHMVRKTSSILATDYEHGFGEGCSTSYNGKRKMLNSRSAKYNTHLENQSMQKPIAFLKKQSGLSVWDRLEEKPLIFPPHSSSSCQLSSSPRISNETEFNSENVNLSFKSNLLVAKIVDPSIVEPSSIENDVIVEKLNTALKKKNMNRMREKVIIPIVSSSLGSSAEHNKIRKKKKKKTLQLREKVVIPIIPSSSDTSANQSIKKNSDVSNIGNASVLADAKNEIVLSFTPGSKSLSNAGVKKAKELVAAKMIGVKEDAEVFSLVEGCIIETPRMNDDTEYSKYESGVDCAKEMNNCTHIGDTENEPIVIIDDSSLQMCQKFQMLHETPANDVSASIITKDSQTQGIVIEILDDSGEEEQLEPVKKLDNKCKSLLDSDVNVTSMPHECIIDNVVAQDSTVDMYGTDFADSSKQIKSELNVLVNSLSWKFGQYMSQSDDAASAELLSSGEVFVSACSKTHCSDNSLKCNSTEIGIETEEVKHHREKVLLITATEEVVPGDGTSSQSGIQGIRTPLFSETSNAPLNLGLPSDGTVQESIMPLLSGCNNTIRDTLDTLTIDPSRKATEHTLLLGPTRKVCPALHLENLSHSPEVSESMDFCSNADDSNTIQEHICNGEASVSTMKSSAVKSGFKLGKLIKSHQFLSNKSDILPANEPKKQVPPNPKIADAELSCDKNVRHANVSRSISRRLNYSSLLKVASRTGQTGRHRTWLRTNAPSLHSLDEVPKPGGFLSEQTTKKPEKIQNTSYFRKGNSLIRKLAAEPPPVLLQTVGASSRKVKFIAESSVKESRSECQDNAAPSHPLLERPDTLPLPPLSNYPGVTMNSHKDCPQLLPADRSLEPGTDQGNQHDNQSRGLFSGNLESQDSASRKTVESVNEKKVTIVKHKVNQLVAAPGPENGDSSKLFTEKIKFSALNSSERSKIVPVSSSYLYYRSKRNQLIRNATPSNSKLTGIPDSKTDSVDSLQNRKTNFSKKRLDNVLHKAKKLARSSRVWTLCGNKLSQSSLGFQSIFPYILLWKRAVYWKSFIKTGNNPISRSSSSWISRKLKSLKKRDTIYKVSTNGFSLRKAGVVSIGGSSLKWSKSIEKHSKKANEEATLAVAEVERKKRERKRSKSTCGDGRNKVGLSCKSIAGVELKQGESIFRVGSARYKMESSKRTLIRIPDDLTSSFASQQPGNKNRLSFEPKRVLIGNHEYVQIGNGNQLVRDPKKFKLILANEKVRWSLHTARLRLAQKRQYCLFFARFGKCNGRNCPYIHDVTKVAICRKFLKDQCFDVKCKLTHKFIPERMPDCSYFLKGLCTNLNCPYRHVKVNSTAALCDGFLRGHCTDADKCCKKHSYTCPLFEATGKCPQGYLCKLHHPKTRSKTRKRKRTKIQNSSPQRYFYSSIDKGTEPLRVSSSLSDLKDGNDIFCSDGRFTEYISLDVESDDDGMKNALMDSYLGKWNPGYLDIQSCDANVHIKPIRIMNRDDLTIL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	Molecular Function	metal ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	63.540
SRP064423	SRR2545915	Juvenile tuber	68.400
SRP108465	SRR5643513	five period of Gastrodia elata	35.430
	SRR5643514	five period of Gastrodia elata	46.760
	SRR5643515	five period of Gastrodia elata	43.790
	SRR5643524	five period of Gastrodia elata	45.920
	SRR5643525	five period of Gastrodia elata	69.590
	SRR5643528	five period of Gastrodia elata	49.650
	SRR5643658	five period of Gastrodia elata	70.240
	SRR5643659	five period of Gastrodia elata	45.780
	SRR5643660	five period of Gastrodia elata	62.000
	SRR5643661	five period of Gastrodia elata	42.130
	SRR5643662	five period of Gastrodia elata	33.950
	SRR5643663	five period of Gastrodia elata	51.690
	SRR5643664	five period of Gastrodia elata	40.490
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	59.930
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	45.700
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	55.200
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	68.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	79.530
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	84.800
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	62.390
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	69.900
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	39.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	48.120
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	36.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	36.640
SRP279888	Gastro	Gastrodia elata tuber	87.00
	Juven	Juvenile tuber	129.11
	Mother_Gastro	Mother tuber of Gastrodia elata	93.90
	Mother_Juven	Mother tuber of Juvenile	158.11