Detail information of GWHGAAEX007937/evm.TU.scaffold_208.29
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 9.00E-26 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|743808585|ref|XP_010928374.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Elaeis guineensis] |
| Swissprot | tr|C0LGS3|Y4372_ARATH | 0 | Probable LRR receptor-like serine/threonine-protein kinase At4g37250 (Precursor) |
| trEMBL | tr|M0TTH4|M0TTH4_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P25210_001} |
| TAIR | AT4G37250 | 0 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000209 | 595583 | 600187 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007937
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 129 | 168 | 5.90E-11 |
| PF13516.5 | LRR_6 | 209 | 221 | 0.66 |
| PF13855.5 | LRR_8 | 233 | 292 | 7.50E-09 |
| PF00560.32 | LRR_1 | 326 | 345 | 0.27 |
| PF00069.24 | Pkinase | 546 | 824 | 2.00E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-III |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.650 |
| SRR2545915 | Juvenile tuber | 7.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.300 |
| SRR5643514 | five period of Gastrodia elata | 11.260 | |
| SRR5643515 | five period of Gastrodia elata | 9.940 | |
| SRR5643524 | five period of Gastrodia elata | 9.620 | |
| SRR5643525 | five period of Gastrodia elata | 1.860 | |
| SRR5643528 | five period of Gastrodia elata | 1.710 | |
| SRR5643658 | five period of Gastrodia elata | 1.850 | |
| SRR5643659 | five period of Gastrodia elata | 8.050 | |
| SRR5643660 | five period of Gastrodia elata | 7.000 | |
| SRR5643661 | five period of Gastrodia elata | 8.120 | |
| SRR5643662 | five period of Gastrodia elata | 6.810 | |
| SRR5643663 | five period of Gastrodia elata | 5.680 | |
| SRR5643664 | five period of Gastrodia elata | 5.210 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.590 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.910 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.050 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.930 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.070 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.290 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.100 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 17.450 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 28.150 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.330 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.820 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.820 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.59 |
| Juven | Juvenile tuber | 4.25 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.17 | |
| Mother_Juven | Mother tuber of Juvenile | 2.16 |