Detail information of GWHGAAEX007938/evm.TU.scaffold_208.30


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|124027777|ref|YP_001013097.1|4.00E-104minichromosome maintenance complex [Hyperthermus butylicus DSM 5456]
KOGKOG04770DNA replication licensing factor, MCM2 component
nrgi|743859169|ref|XP_010942612.1|0PREDICTED: probable DNA helicase MCM9 [Elaeis guineensis]
Swissprottr|F4IFF3|MCM9_ARATH0Probable DNA helicase MCM9
trEMBLtr|A0A061E334|A0A061E334_THECC0Minichromosome maintenance 9 isoform 2 {ECO:0000313|EMBL:EOX98731.1}
TAIRAT2G140500minichromosome maintenance 9

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000209600402699474-
Transcript Sequence

Network for GWHGAAEX007938

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17207.2MCM_OB1232531.20E-23
PF00493.22MCM3116198.50E-104
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006270Biological ProcessDNA replication initiation
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms18.250
SRR2545915Juvenile tuber20.930
SRP108465SRR5643513five period of Gastrodia elata14.080
SRR5643514five period of Gastrodia elata14.850
SRR5643515five period of Gastrodia elata16.570
SRR5643524five period of Gastrodia elata14.440
SRR5643525five period of Gastrodia elata14.390
SRR5643528five period of Gastrodia elata12.000
SRR5643658five period of Gastrodia elata17.640
SRR5643659five period of Gastrodia elata23.100
SRR5643660five period of Gastrodia elata23.610
SRR5643661five period of Gastrodia elata20.980
SRR5643662five period of Gastrodia elata20.440
SRR5643663five period of Gastrodia elata24.080
SRR5643664five period of Gastrodia elata20.230
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_116.870
SRR6049655Rhizomagastrodiae_C368-T10_good_114.820
SRR6049656Rhizomagastrodiae_C368-T07_good_115.980
SRR6049657Rhizomagastrodiae_C368-T07_good_116.340
SRR6049658Rhizomagastrodiae_C368-T04_good_117.780
SRR6049659Rhizomagastrodiae_C368-T04_good_117.740
SRR6049660Rhizomagastrodiae_C368-T01_good_116.360
SRR6049661Rhizomagastrodiae_C368-T04_good_117.510
SRR6049662Rhizomagastrodiae_C368-T01_good_114.530
SRR6049663Rhizomagastrodiae_C368-T01_good_115.280
SRR6049664Rhizomagastrodiae_C368-T10_good_114.940
SRR6049665Rhizomagastrodiae_C368-T10_good_114.940
SRP279888GastroGastrodia elata tuber 24.07
JuvenJuvenile tuber25.01
Mother_GastroMother tuber of Gastrodia elata 22.10
Mother_JuvenMother tuber of Juvenile 20.70