Gene detail

Detail information of GWHGAAEX007944/evm.TU.scaffold_208.37

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695060278\|ref\|XP_009418522.1\|	1.01E-57	PREDICTED: F-box protein GID2-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9STX3\|GID2_ARATH	6.00E-47	F-box protein GID2
trEMBL	tr\|M0U2M0\|M0U2M0_MUSAM	4.00E-58	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P22610_001}
TAIR	AT4G24210	2.00E-46	F-box family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000209	741790	742344	-

Transcript Sequence
>GWHTAAEX007944 ATGAAGCGGCGGGCGATCGGCGGATCGGAAGGCGAAGATCCGCCTGATACCGCAGAAAAGAAATTTAAAATCGCCGGCTCCGGCGATCCGGAGGAAGAAGAAAAGATACCGGCCGTTGCAGGGCCGGAGCTAGGGGAGGATCTGGTTTTCGAAATATTGAAGAGGGCCGACGCGAGGACCCTGGCGGCATCGGCGTGCGTGAGCCGACGGTGGAGATCACTTGCAGAAGATGAACGGCTCTGGGAGGCGGTGTGCACCCGCCACTGGGCCAACATCGGCTGCGGAAACCATCAGCTCCGGTCGGTGGTTCTCGCACTGGGCGGATTCCGCCGGCTCCACTCCCTCTACCTCCTCCCGTTCCTTCGACCGGCCGCCGCTGCCGGTCGACCTAGGCCGGCGCTTCCGCTTCCGGTTCTCTCTGCTCCACCCAACCGGCCCGGTTTGCCCTCCCGATGGGGCAAGGACGAGGTCCTGCTGTCGCTTTCGTTGCTATCCATAGGCTACTTCGAAAGGATGAACCTTAATTACCCGCGCTCTGGCGGCGGTGGGGGCTGA

Network for GWHGAAEX007944

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.6	F-box-like	47	87	2.70E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
K14495	GID2, SLY1	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	84.680
SRP064423	SRR2545915	Juvenile tuber	58.050
SRP108465	SRR5643513	five period of Gastrodia elata	218.800
	SRR5643514	five period of Gastrodia elata	132.380
	SRR5643515	five period of Gastrodia elata	174.640
	SRR5643524	five period of Gastrodia elata	124.220
	SRR5643525	five period of Gastrodia elata	388.710
	SRR5643528	five period of Gastrodia elata	240.030
	SRR5643658	five period of Gastrodia elata	227.090
	SRR5643659	five period of Gastrodia elata	181.540
	SRR5643660	five period of Gastrodia elata	206.920
	SRR5643661	five period of Gastrodia elata	256.260
	SRR5643662	five period of Gastrodia elata	279.620
	SRR5643663	five period of Gastrodia elata	170.820
	SRR5643664	five period of Gastrodia elata	404.110
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	335.930
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	306.790
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	273.450
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	382.390
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	364.300
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	402.290
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	348.960
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	309.820
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	221.760
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	318.940
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	248.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	248.000
SRP279888	Gastro	Gastrodia elata tuber	98.49
	Juven	Juvenile tuber	132.41
	Mother_Gastro	Mother tuber of Gastrodia elata	284.29
	Mother_Juven	Mother tuber of Juvenile	134.28