Gene detail

Detail information of GWHGAAEX007949/evm.TU.scaffold_208.42

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|451947520\|ref\|YP_007468115.1\|	1.00E-23	dynamin family protein [Desulfocapsa sulfexigens DSM 10523]
KOG	KOG1954	0	Endocytosis/signaling protein EHD1
nr	gi\|743766324\|ref\|XP_010913401.1\|	0	PREDICTED: EH domain-containing protein 1-like [Elaeis guineensis]
trEMBL	tr\|I1Q4P8\|I1Q4P8_ORYGL	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:ORGLA06G0211100.1}
TAIR	AT3G20290	0	EPS15 homology domain 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000209	855935	891884	+

Transcript Sequence
>GWHTAAEX007949 ATGCCAGTTTTCGCATTTGACTCGTCACGAGCGTCTGGGCGGCCAAGCTGCTGTTTTACGGGCGTTTGGGCACGCCTGGACGCCTGTTCTAGGGGCGCTTGGGCGCCTAGCCTTTGGATCGAGGGGCTGCAGGGACCTCCTACAAATTCACCGGGACTATATGGAGACGGACGAGTTACGGGGAAGGATGCACTCAACTTCTTCGCCATGTCCAAGCTACCTCGGCCTGAACTGAAGCAGCTAGAGAAGAGGATGGTGCGGGTCCTGGTGAGGTGTAAAAGGATGACAGAGGTGATTGTGCTTGAGATTCAAAAGTTCTTTGAGAAGGTGTGGACTTTTGCTGACTCTAAGAGACAGGGCTTTCTTGATTTTGAAGAATTTATTAGTGCAATGCAGCTTATTTCATTGGCCCAAGGCGGTGTTGAGATCACTCAAGCTTCTCTAACTCAAACAGATATTATGTTCCTCATGTTTGTCTCCATGTTTTCCAGAAAAACACGTGCTCCCCTACTCACCATGGTCATCAATGGGATGATGCCTCTGAAATCAGTGACTTCAATCATTGATGGCTTGAAGAAATTATATTCTGTAAAGCTGAAGCCTCTTGAAGCAGCTTACAAATTTAATGATTTTGTTTCGCCATTGTTGACAAATAGCGATTTTGATGCCAAACCCATGGTCATGCTTTTGGGTCAATATTCCACTGGAAAGACTACATTCATCAAGCACTTGCTCAGGAGTAGCTACCCAGGAGCCCATATAGGACCAGAACCTACAACAGATAAATTTGTTGTTGTTATGTCAGGTCCAGATGAGAGGAGCGTTCCTGGAAATACTATTGCAGTACAAGCAGATATGCCTTATAGTGGTCTGTCTTCATTTGGAACAGCCTTCTTATCAAAATTTGAGTGTTCACAAATGCCACATCCACTGCTGGACGACATCACGTTTGTTGATACCCCAGGGGTTCTTTCGGGAGAGAAACAACGATCACAGCGCAGCTATGATTTTACCGGGGTTACTTCTTGGTTCGCGGCGAAATGTGATCTTATACTTCTTTTGTTCGACCCGCATAAACTTGATATAAGTGATGAGTTCAAGCGAGTAATTGGGTCTCTTCGGGGTCATGATGACAAAATACGTGTTGTTTTAAACAAGGCTATCCAAGTTGACCCTCAGCAGCTTATGAGAGTCTATGGAGCTTTACTGTGGTCGCTTGGCAAAGTTCTAAATACCCCTGAGGTTATGCGCGTGTACATTGGTTCTTTCAATGACAACCCAACTAGTGAAGCAGGCAACGGTCCTCTGGGGAAGGAGCTGTTTGAAAGAGAACAGGAAGACCTTATTTGTGACCTAAAAGATATCCCTAAAATGGCTTGTGCGCGCAGAATAAATGAATTTGTCAAACGTTCAAGAGCAGCAATAATTCATGCACATATAATTAGCCATTTGAAGAAAGAGATGCCTGCACTGATAGGAAAGGCTAAGGCTCAACAGAGACTCATCGATAACCTTGAGGATGAGTTCGTGAAGATACAGAAGGAATTTCATCTACCAGCGGGCGATTTTCCCAATACTGAGCAGTTCAAAGAGGTGTTGAGCGGTTACAGCATAGATAAGTTTGAGAGACTGAGGCCAAAGATGGTCCAAGCCGTCGATGATATGCTCAGATACGACATCCCCAACCTTCTTAAAAGCTTCAGAAACCCTTTTGAATAATCAACCCCCTGAGTTTAATTAAAGCAAAAGGTAGTGATGCCATTATTGTTCATCGGTATTTTCTGTCTATAGTGGTGTCTAAATTTTATATATTTTTTTTAATGAAAGTGGGCTTCAAATAAAAAGCAAATATGTGTCTGGTAAAATTTGAATTCATGCTTCAC

Network for GWHGAAEX007949

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16880.4	EHD_N	190	222	1.90E-15
PF00350.22	Dynamin_N	227	386	5.20E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12483	EHD1	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0005525	Molecular Function	GTP binding
GO:0005515	Molecular Function	protein binding
GO:0005509	Molecular Function	calcium ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.330
SRP064423	SRR2545915	Juvenile tuber	2.860
SRP108465	SRR5643513	five period of Gastrodia elata	0.000
	SRR5643514	five period of Gastrodia elata	0.000
	SRR5643515	five period of Gastrodia elata	0.000
	SRR5643524	five period of Gastrodia elata	0.000
	SRR5643525	five period of Gastrodia elata	0.080
	SRR5643528	five period of Gastrodia elata	0.090
	SRR5643658	five period of Gastrodia elata	0.030
	SRR5643659	five period of Gastrodia elata	0.030
	SRR5643660	five period of Gastrodia elata	0.040
	SRR5643661	five period of Gastrodia elata	0.110
	SRR5643662	five period of Gastrodia elata	0.070
	SRR5643663	five period of Gastrodia elata	0.090
	SRR5643664	five period of Gastrodia elata	0.170
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.390
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.590
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.490
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.500
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.550
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.640
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.530
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.250
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.250
SRP279888	Gastro	Gastrodia elata tuber	1.36
	Juven	Juvenile tuber	0.07
	Mother_Gastro	Mother tuber of Gastrodia elata	0.21
	Mother_Juven	Mother tuber of Juvenile	0.02