Detail information of GWHGAAEX007952/evm.TU.scaffold_208.45
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|116623982|ref|YP_826138.1| | 1.00E-08 | hypothetical protein Acid_4894 [Candidatus Solibacter usitatus Ellin6076] |
| KOG | KOG1572 | 4.00E-98 | Predicted protein tyrosine phosphatase |
| nr | gi|703153206|ref|XP_010110621.1| | 4.88E-108 | putative tyrosine-protein phosphatase [Morus notabilis] |
| Swissprot | tr|Q9ZVN4|Y1500_ARATH | 1.00E-98 | Probable tyrosine-protein phosphatase At1g05000 |
| trEMBL | tr|W9SG98|W9SG98_9ROSA | 2.00E-108 | Putative tyrosine-protein phosphatase {ECO:0000313|EMBL:EXC27243.1} |
| TAIR | AT1G05000 | 4.00E-98 | Phosphotyrosine protein phosphatases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000209 | 927440 | 954853 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007952
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module12 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03162.12 | Y_phosphatase2 | 30 | 181 | 4.50E-60 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016311 | Biological Process | dephosphorylation |
| GO:0004725 | Molecular Function | protein tyrosine phosphatase activity |
| GO:0016791 | Molecular Function | phosphatase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 25.410 |
| SRR2545915 | Juvenile tuber | 18.580 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 25.530 |
| SRR5643514 | five period of Gastrodia elata | 41.160 | |
| SRR5643515 | five period of Gastrodia elata | 36.350 | |
| SRR5643524 | five period of Gastrodia elata | 41.140 | |
| SRR5643525 | five period of Gastrodia elata | 27.480 | |
| SRR5643528 | five period of Gastrodia elata | 48.140 | |
| SRR5643658 | five period of Gastrodia elata | 20.190 | |
| SRR5643659 | five period of Gastrodia elata | 12.860 | |
| SRR5643660 | five period of Gastrodia elata | 23.950 | |
| SRR5643661 | five period of Gastrodia elata | 18.920 | |
| SRR5643662 | five period of Gastrodia elata | 28.520 | |
| SRR5643663 | five period of Gastrodia elata | 25.090 | |
| SRR5643664 | five period of Gastrodia elata | 19.320 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 25.680 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 39.420 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.610 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 26.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 25.490 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 22.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 24.040 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.590 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 31.130 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 39.100 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 36.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 36.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 25.70 |
| Juven | Juvenile tuber | 31.20 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 119.20 | |
| Mother_Juven | Mother tuber of Juvenile | 87.78 |