Detail information of GWHGAAEX007953/evm.TU.scaffold_208.46
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|389862031|ref|YP_006364271.1| | 6.00E-33 | long-chain-fatty-acid--CoA ligase [Modestobacter marinus] |
| KOG | KOG1176 | 1.00E-55 | Acyl-CoA synthetase |
| nr | gi|672132016|ref|XP_008789581.1| | 5.02E-80 | PREDICTED: putative 4-coumarate--CoA ligase-like 8 [Phoenix dactylifera] |
| Swissprot | tr|Q84P21|4CLL5_ARATH | 4.00E-56 | 4-coumarate--CoA ligase-like 5 |
| trEMBL | tr|J3MNF3|J3MNF3_ORYBR | 1.00E-56 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB07G29350.1} |
| TAIR | AT1G20510 | 1.00E-55 | OPC-8:0 CoA ligase1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000209 | 954951 | 968240 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007953
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module12 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01061.23 | ABC2_membrane | 11 | 97 | 9.90E-12 |
| PF00501.27 | AMP-binding | 103 | 375 | 5.90E-52 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10526 | OPCL1 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| alpha-Linolenic acid metabolism | map00592 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.420 |
| SRR2545915 | Juvenile tuber | 1.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.380 |
| SRR5643514 | five period of Gastrodia elata | 0.380 | |
| SRR5643515 | five period of Gastrodia elata | 0.690 | |
| SRR5643524 | five period of Gastrodia elata | 0.560 | |
| SRR5643525 | five period of Gastrodia elata | 1.290 | |
| SRR5643528 | five period of Gastrodia elata | 1.520 | |
| SRR5643658 | five period of Gastrodia elata | 0.970 | |
| SRR5643659 | five period of Gastrodia elata | 0.170 | |
| SRR5643660 | five period of Gastrodia elata | 0.370 | |
| SRR5643661 | five period of Gastrodia elata | 0.100 | |
| SRR5643662 | five period of Gastrodia elata | 0.240 | |
| SRR5643663 | five period of Gastrodia elata | 0.260 | |
| SRR5643664 | five period of Gastrodia elata | 0.280 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.560 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.660 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.740 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.900 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.380 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.400 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.070 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.610 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.760 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.840 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.840 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.67 |
| Juven | Juvenile tuber | 0.17 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 18.37 | |
| Mother_Juven | Mother tuber of Juvenile | 1.25 |