Detail information of GWHGAAEX007955/evm.TU.scaffold_208.47
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|15599386|ref|NP_252880.1| | 4.00E-31 | iron/ascorbate oxidoreductase [Pseudomonas aeruginosa PAO1] |
| KOG | KOG0143 | 9.00E-135 | Iron/ascorbate family oxidoreductases |
| nr | gi|117586718|dbj|BAF36562.1| | 1.52E-165 | ACC oxidase [Cymbidium hybrid cultivar] |
| Swissprot | tr|Q39705|ACCO2_DORSP | 3.00E-164 | 1-aminocyclopropane-1-carboxylate oxidase 2 |
| trEMBL | tr|A0JBY7|A0JBY7_9ASPA | 6.00E-166 | ACC oxidase {ECO:0000313|EMBL:BAF36562.1} |
| TAIR | AT1G05010 | 9.00E-135 | ethylene-forming enzyme |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000209 | 971743 | 974212 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007955
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14226.5 | DIOX_N | 7 | 101 | 1.90E-12 |
| PF03171.19 | 2OG-FeII_Oxy | 166 | 261 | 3.30E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K05933 | E1.14.17.4 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Cysteine and methionine metabolism | map00270 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 29.270 |
| SRR2545915 | Juvenile tuber | 30.380 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 89.960 |
| SRR5643514 | five period of Gastrodia elata | 63.360 | |
| SRR5643515 | five period of Gastrodia elata | 267.490 | |
| SRR5643524 | five period of Gastrodia elata | 175.250 | |
| SRR5643525 | five period of Gastrodia elata | 2498.240 | |
| SRR5643528 | five period of Gastrodia elata | 5300.750 | |
| SRR5643658 | five period of Gastrodia elata | 1634.820 | |
| SRR5643659 | five period of Gastrodia elata | 108.080 | |
| SRR5643660 | five period of Gastrodia elata | 110.560 | |
| SRR5643661 | five period of Gastrodia elata | 79.880 | |
| SRR5643662 | five period of Gastrodia elata | 292.980 | |
| SRR5643663 | five period of Gastrodia elata | 122.850 | |
| SRR5643664 | five period of Gastrodia elata | 126.120 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 33.590 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.800 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.740 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 32.700 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 31.040 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 39.930 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 44.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 30.970 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 34.890 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 34.010 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 28.650 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 28.650 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 99.71 |
| Juven | Juvenile tuber | 24.48 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 713.33 | |
| Mother_Juven | Mother tuber of Juvenile | 88.46 |