Detail information of GWHGAAEX007962/evm.TU.scaffold_208.55


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743876098|ref|XP_010907496.1|1.72E-165PREDICTED: nuclear pore complex protein NUP43 [Elaeis guineensis]
Swissprottr|Q24JJ9|NUP43_ARATH8.00E-123Nuclear pore complex protein NUP43 {ECO:0000303|PubMed:21189294}
trEMBLtr|V7CC45|V7CC45_PHAVU3.00E-131Uncharacterized protein {ECO:0000313|EMBL:ESW26850.1}
TAIRAT4G308406.00E-106Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000020911180461132996+
Transcript Sequence

Network for GWHGAAEX007962

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14305NUP43 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms23.870
SRR2545915Juvenile tuber16.750
SRP108465SRR5643513five period of Gastrodia elata23.920
SRR5643514five period of Gastrodia elata21.650
SRR5643515five period of Gastrodia elata21.150
SRR5643524five period of Gastrodia elata22.260
SRR5643525five period of Gastrodia elata13.990
SRR5643528five period of Gastrodia elata9.620
SRR5643658five period of Gastrodia elata9.490
SRR5643659five period of Gastrodia elata20.660
SRR5643660five period of Gastrodia elata26.450
SRR5643661five period of Gastrodia elata22.910
SRR5643662five period of Gastrodia elata17.960
SRR5643663five period of Gastrodia elata18.780
SRR5643664five period of Gastrodia elata17.240
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_123.300
SRR6049655Rhizomagastrodiae_C368-T10_good_126.070
SRR6049656Rhizomagastrodiae_C368-T07_good_123.210
SRR6049657Rhizomagastrodiae_C368-T07_good_123.310
SRR6049658Rhizomagastrodiae_C368-T04_good_123.800
SRR6049659Rhizomagastrodiae_C368-T04_good_119.200
SRR6049660Rhizomagastrodiae_C368-T01_good_123.530
SRR6049661Rhizomagastrodiae_C368-T04_good_124.050
SRR6049662Rhizomagastrodiae_C368-T01_good_127.690
SRR6049663Rhizomagastrodiae_C368-T01_good_125.480
SRR6049664Rhizomagastrodiae_C368-T10_good_121.690
SRR6049665Rhizomagastrodiae_C368-T10_good_121.690
SRP279888GastroGastrodia elata tuber 35.34
JuvenJuvenile tuber22.91
Mother_GastroMother tuber of Gastrodia elata 16.15
Mother_JuvenMother tuber of Juvenile 16.13