Detail information of GWHGAAEX007967/evm.TU.scaffold_208.61
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3208 | 8.00E-98 | SNARE protein GS28 |
| nr | gi|672141003|ref|XP_008794320.1| | 7.83E-114 | PREDICTED: Golgi SNAP receptor complex member 1-1-like isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q9LMP7|GOS11_ARATH | 2.00E-98 | Golgi SNAP receptor complex member 1-1 |
| trEMBL | tr|M0THZ4|M0THZ4_MUSAM | 1.00E-111 | Golgi SNAP receptor complex member 1 {ECO:0000256|PIRNR:PIRNR027109} |
| TAIR | AT1G15880 | 8.00E-98 | golgi snare 11 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000209 | 1233052 | 1254376 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007967
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12352.7 | V-SNARE_C | 128 | 192 | 4.60E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08495 | GOSR1, GOS1 | SNARE interactions in vesicular transport | map04130 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006888 | Biological Process | ER to Golgi vesicle-mediated transport |
| GO:0016021 | Cellular Component | integral component of membrane |
| GO:0005801 | Cellular Component | cis-Golgi network |
| GO:0000139 | Cellular Component | Golgi membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 60.410 |
| SRR2545915 | Juvenile tuber | 54.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.460 |
| SRR5643514 | five period of Gastrodia elata | 26.540 | |
| SRR5643515 | five period of Gastrodia elata | 21.970 | |
| SRR5643524 | five period of Gastrodia elata | 23.930 | |
| SRR5643525 | five period of Gastrodia elata | 34.200 | |
| SRR5643528 | five period of Gastrodia elata | 28.680 | |
| SRR5643658 | five period of Gastrodia elata | 34.860 | |
| SRR5643659 | five period of Gastrodia elata | 26.120 | |
| SRR5643660 | five period of Gastrodia elata | 28.670 | |
| SRR5643661 | five period of Gastrodia elata | 29.070 | |
| SRR5643662 | five period of Gastrodia elata | 28.820 | |
| SRR5643663 | five period of Gastrodia elata | 31.780 | |
| SRR5643664 | five period of Gastrodia elata | 33.390 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 40.270 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 37.050 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 39.860 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 41.380 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 51.580 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 65.390 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 41.560 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 49.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 27.490 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 36.680 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 29.210 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 29.210 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 73.09 |
| Juven | Juvenile tuber | 45.63 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 38.51 | |
| Mother_Juven | Mother tuber of Juvenile | 41.79 |