Gene detail

Detail information of GWHGAAEX007970/evm.TU.scaffold_208.64

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672117248\|ref\|XP_008781803.1\|	PREDICTED: probable auxin efflux carrier component 2 [Phoenix dactylifera]
Swissprot	tr\|Q651V6\|PIN2_ORYSJ	Probable auxin efflux carrier component 2
trEMBL	tr\|J3MGI0\|J3MGI0_ORYBR	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB06G31240.1}
TAIR	AT5G57090	Auxin efflux carrier family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000209	1271147	1273652	+

Transcript Sequence
>GWHTAAEX007970 CAATACTTATATGCTTAAATGTATTCACGGCATCCCCATATGTCTCTCATGTGATGTTTGATTTGAGCTATCCTTAAATATTAGAAGATACTATAATTCAACCCACAAACTCTTGACTCCCTCTCTCATTATTTGAGTGAGTGTGTTGTATCAAGGAGCAACTCAGGAGCAAGAAAATGATAAGGGGGAAGGATATCTATGATGTGATGAGCGCCACAGTCCCCCTCTATGTGGCTATGTTCCTCGCCTACGGCTCAGTGCGGTGGTGGCGCGTCTTTACCCCGGACCAGTGCTCCGGCATCAACCGCTTTGTCGCCGTTTTCGCCGTCCCCCTCCTCTCGTTCCACTTCATCTCGTCGAACAACCCGTACTCTATGAACTATCACTTCATCGCCGCCGACTCTTTGCAAAAGCTCGTAATCCTCTCCGCCCTCTTCCTCTACCACCATATCGCTCCCCGTCATAGCCGCGCCCTCGATTGGTCCATCACCCTCTTCTCCCTCTCCACCCTCCCCAACACCCTCGTCATGGGCATCCCCCTCCTCCGCGCCATGTACGGCGACTTCTCCGGCTCCCTCATGGTTCAGATCGTCGTCCTCCAATCCGTCATTTGGTACACCCTCATGCTAGTTCTCTTCGAGTACCGCGCTGCCCGAGCCCTCATCGCCGACCAATTCTCGCCCGACGTCGCCAGGTCCATCGCCTCCTTCCATGTTGAGTCCGACGTTGTGTCACTCGCCGGCGGCGCCACAGCTCCGCTCCATATGGACGCGAACATCGGCACCGACGGCCGGCTCCACGTAGTTGTGCTGAGGGACCGCTCCGCAACGCCTTTCCTCAACAACAGCAGCTACAACAACTACAACAACAACAACAACTCAAAATCGGTCATGATGACCCCGCGGGCGTCAAACCTCACCGGGATGGAGATCTACTCCCTTCAATCCTCGAGGGAGCCGACCCCGCGGGGATCAAGCTTCAACCAATCCGAGTTCTGCTCCATGTTCGGTGCCGTCCCGGCCGCCATGGGCCCGCTCGACGAGGAGGTTGAGGCGAGGTTGGGAAAGCAGAGGGCGGCGCGCAGCCGGAGCGGCGATTTCCTGAGCACGAACTTCGGCGGGAAGAGCTTAAAGGGCGGTGTTTCTTCTTCTGCTGGCGCCAACAATGTCTCCAGCAAAGAGCTCCATATGTATGTTTGGAGCGCATCTAGCGCGTCGCCGGTGTCCGAGGCGAATCTCAGGATGGCGGTCAACCGGGCAGCATCCGCTGACTTTGGTGCAATGGATCAGCCATCCAATAAGTCTGCCCTCCACCTTCCTGATTTCCCTTCCTCTAGAGGTACTCCCAAACACAGTGATTCTGGTCTATTGTGCAAGCAAACAATTCTATTGCCTGCTTTTCTAGGATTGCCTTTAGGTGCAACCGATGGCGCGAGCCCGATCAGGAAAGGGGGGCACGCGGCAGAACCGGAGGACGGTTTGGGCAAGACTGGCGGGCTCAAGTTTTCGGCGAACGGGTCACCGTACTTGGACGACGCTAGCGCCACGACAATGAAGAAGGAAGCTGCGGCGGGGAACTCCGAAGGATCGGGGCTGCAGGTTGAAGAAATCGATGGCCATGATCAGATGCCGCCGGCAAGCGTGATGACGAGGCTCATTCTCATCATGGTGTGGAGGAAGCTCATCAGAAACCCCAACACTTATTCCAGCCTCATCGGCCTGATCTGGTCCTTGGTTTCCTACAGGTGGAATATTGAGATGCCGGCAATCATACAGGGCTCTGTATCTATTCTCTCCAATGCTGGATTGGGAATGGCCATGTTCAGCTTAGGTCTGTTCATGGCCTTGCAACCTAAGCTGATAGCATGCGGAAAATCTGTGGCCGCTTTCTCCATGGCCGTCCGATTCTTAACGGGTCCGGCTGTGATTGCTGCCACGTCAATTGCCATCGGCCTACGTGGAGTCCTCCTTCACATTGCGATTGTGCAGGCAGCACTTCCGCAAGGCATAGTTCCATTCGTTTTCGCGAAGGAGTACAGCTGCCACCCAGACATCCTTAGCACCGGGTAA

Network for GWHGAAEX007970

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03547.17	Mem_trans	10	629	1.20E-153

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.000
SRP064423	SRR2545915	Juvenile tuber	0.080
SRP108465	SRR5643513	five period of Gastrodia elata	0.300
	SRR5643514	five period of Gastrodia elata	1.160
	SRR5643515	five period of Gastrodia elata	1.100
	SRR5643524	five period of Gastrodia elata	0.880
	SRR5643525	five period of Gastrodia elata	1.560
	SRR5643528	five period of Gastrodia elata	1.570
	SRR5643658	five period of Gastrodia elata	1.500
	SRR5643659	five period of Gastrodia elata	2.200
	SRR5643660	five period of Gastrodia elata	1.220
	SRR5643661	five period of Gastrodia elata	3.540
	SRR5643662	five period of Gastrodia elata	1.310
	SRR5643663	five period of Gastrodia elata	2.710
	SRR5643664	five period of Gastrodia elata	1.910
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.990
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.520
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.240
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.500
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.110
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.370
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.600
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.150
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.750
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.940
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.940
SRP279888	Gastro	Gastrodia elata tuber	4.17
	Juven	Juvenile tuber	58.90
	Mother_Gastro	Mother tuber of Gastrodia elata	1.06
	Mother_Juven	Mother tuber of Juvenile	4.10