Detail information of GWHGAAEX007972/evm.TU.scaffold_208.66
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2086 | 3.00E-124 | Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion |
| nr | gi|695000735|ref|XP_009413244.1| | 9.83E-151 | PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q7Y175|UBAX1_ARATH | 2.00E-106 | UBA and UBX domain-containing protein At4g15410 |
| trEMBL | tr|M0S0Y5|M0S0Y5_MUSAM | 4.00E-151 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P18270_001} |
| TAIR | AT4G22150 | 3.00E-124 | plant UBX domain-containing protein 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000209 | 1305676 | 1309613 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007972
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14555.5 | UBA_4 | 10 | 49 | 2.60E-11 |
| PF08059.12 | SEP | 207 | 280 | 5.90E-26 |
| PF00789.19 | UBX | 326 | 400 | 4.50E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14012 | SHP1, UBX1, NSFL1C | Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 83.200 |
| SRR2545915 | Juvenile tuber | 73.680 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 110.890 |
| SRR5643514 | five period of Gastrodia elata | 90.050 | |
| SRR5643515 | five period of Gastrodia elata | 89.260 | |
| SRR5643524 | five period of Gastrodia elata | 100.690 | |
| SRR5643525 | five period of Gastrodia elata | 72.740 | |
| SRR5643528 | five period of Gastrodia elata | 68.430 | |
| SRR5643658 | five period of Gastrodia elata | 76.510 | |
| SRR5643659 | five period of Gastrodia elata | 113.540 | |
| SRR5643660 | five period of Gastrodia elata | 135.690 | |
| SRR5643661 | five period of Gastrodia elata | 126.110 | |
| SRR5643662 | five period of Gastrodia elata | 124.020 | |
| SRR5643663 | five period of Gastrodia elata | 125.730 | |
| SRR5643664 | five period of Gastrodia elata | 132.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 129.670 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 175.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 112.840 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 151.340 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 145.320 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 167.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 141.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 129.140 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 93.190 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 109.890 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 97.310 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 97.310 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 149.02 |
| Juven | Juvenile tuber | 230.58 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 114.52 | |
| Mother_Juven | Mother tuber of Juvenile | 248.31 |