Detail information of GWHGAAEX007976/evm.TU.scaffold_208.71
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|406024929|ref|YP_006705230.1| | 2.00E-06 | Ubiquitin specific protease [Cardinium endosymbiont cEper1 of Encarsia pergandiella] |
| KOG | KOG1867 | 2.00E-165 | Ubiquitin-specific protease |
| nr | gi|743807005|ref|XP_010927926.1| | 0 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Elaeis guineensis] |
| Swissprot | tr|Q9LEW0|UBP22_ARATH | 7.00E-166 | Ubiquitin carboxyl-terminal hydrolase 22 |
| trEMBL | tr|W1PHH4|W1PHH4_AMBTC | 0 | Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435} |
| TAIR | AT5G10790 | 2.00E-165 | ubiquitin-specific protease 22 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000209 | 1333503 | 1337818 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007976
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02148.18 | zf-UBP | 52 | 111 | 7.90E-09 |
| PF00443.28 | UCH | 156 | 508 | 9.30E-48 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | USP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006511 | Biological Process | ubiquitin-dependent protein catabolic process |
| GO:0016579 | Biological Process | protein deubiquitination |
| GO:0036459 | Molecular Function | thiol-dependent ubiquitinyl hydrolase activity |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.940 |
| SRR2545915 | Juvenile tuber | 4.830 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.980 |
| SRR5643514 | five period of Gastrodia elata | 6.720 | |
| SRR5643515 | five period of Gastrodia elata | 5.130 | |
| SRR5643524 | five period of Gastrodia elata | 5.070 | |
| SRR5643525 | five period of Gastrodia elata | 3.660 | |
| SRR5643528 | five period of Gastrodia elata | 1.990 | |
| SRR5643658 | five period of Gastrodia elata | 1.430 | |
| SRR5643659 | five period of Gastrodia elata | 9.840 | |
| SRR5643660 | five period of Gastrodia elata | 10.730 | |
| SRR5643661 | five period of Gastrodia elata | 11.090 | |
| SRR5643662 | five period of Gastrodia elata | 8.860 | |
| SRR5643663 | five period of Gastrodia elata | 8.880 | |
| SRR5643664 | five period of Gastrodia elata | 8.170 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.440 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.160 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.580 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.810 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.330 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.750 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.870 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.120 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.580 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.580 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.02 |
| Juven | Juvenile tuber | 7.34 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.19 | |
| Mother_Juven | Mother tuber of Juvenile | 4.45 |