Gene detail

Detail information of GWHGAAEX007977/evm.TU.scaffold_208.72

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672180953\|ref\|XP_008810680.1\|	PREDICTED: uncharacterized protein LOC103722038 [Phoenix dactylifera]
trEMBL	tr\|M0U8R3\|M0U8R3_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP13040_001}
TAIR	AT4G30790	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000209	1339558	1380502	-

Transcript Sequence
>GWHTAAEX007977 ATGAGTTCGAGATCTATTATTTCGACGGACGAATTCGTCCCCGGGAGAAGGCTGCTGGTTCATATAGCTGAGAATGGCCACAGCTACGAGTTTGAGTGCGATGGTTTGACTGTCGTGGAGGCCATACAGATGTCTCTCGAGTCACTCTGTGGGGTGCATATAAGTGATCAGCTCCTCCTTTGCGGCAACACTTCATTGGATTCTCAGCAAACGCTAGCTTACTACAAGCTCCCACAGGATGACAGGGAGGTTTTCCTTTATAACAAATCCAGACTCCATGCTGACTCTCCTTGCCCATCTCCCGAAACCATTGATATACCCAATGTCTCAATCCCAACTCCAGTCTCACCATCACTGAATCCTCATCCGTTGGACGAAGCATCAGATCCTGCTCTAAAGGCTTTGGCTTTATATGAACGTCAATTTCGTTTCCATTTTCAGTATGCTAATGCCATATATGGATACACACGTACGAAATTTGAGGTTTGCAGGAGGCTGTTCAGGGAGAAGCAGGTCCAGGAGAGAGCATTAGAAACTGCTAGGAGAAATCTGGACCACACTTTCAGAAAGTTGCAACAAAGATATACTGAATTTATCAGACATTTCAAACATCAGCATCGTTTTCACTCTGAACAGTTGAATAAATTCGAGAGGGATGTAGAGCGATTGCGGTCTGTGATGCTTCTTCCTTTGCTTCAAAGTGATTCAAGGAAATGTTTATTGGATCTTGTGAAAGAGACTGATCTGCGAAAATGGGCAGATAATTGCTTCAATTCACATAAGCAATTTGAAAACAAAGTTTCACAGTTGAAGTTAAATTTTGGAGAATTGAACAGGAGGGTTGGCAATGTGTTTCTTGATATGGAATCTGTTGGCTCCAAGGACTTGGAGTTGATGATGAAAGGCCATCAGACAATTTTCAGTGATCAGAAAAGTATTATGCAGTCATTAAGCAAAGATGTGAACACTATTAAAAAACTTGTGGATGATTGCTTAAATTATCAACACTCTGGGTCGCTTCGCCCTCATGATGCTATTTCAGCTCTTGGTCCCATGTATGAAGTTCATGAAAAAACTCATCTTCCCAAGGTTCAGAGCTGTGATCACGCGATTGCAAAATTACTTGAAAAATCATTGGCAAAGAAAAATGAGATGAATACGGTAGTACATTTGTGCATGCAAAAAGTAAAGTCTGCTCAATTCAGCATTAAAGACATGATGAATGAGCTTCATGCATTCCAAGAGGTATTGGGGCACAAGGAAAAGGAATTTGATAATTTAAAACTTGTTAATGGAATCTGCCATGCGTACAGGGCTTGTCTTGCTGAGGTTGTTAGGAGAAAATCATCTTTAAAATTGTACATGGGTCTAGCTGGTCAATTGGCTGAAAGGCTTGCATCAGAAAGAGAGGCTGAGATTAGAAGACGTGAAGGATTTTGTAAAGCATGGGAAAAATACATCCCACATGATATTCTATCATCTTTGGGATTATTTGACTCTCCAAGTCAGTGTGATGTTAACATAGTTCCTTTTGATACAAACCTGATTGATATTGATGTTGGTGATGTTGATCGTTATGCTCCCCAATCGCTAATTGGTATTCAGCCTAGATTTGAGAATAGTAAATCACCCGGGAATTACACCGCAATATCTATTACCTCTAATTTGACAACATCTGAAGAAAATCCTGTAGCTTCTTGTGAAGATGCTAAGTTTGAGGACCTGATTGAAGGCTGCCTTCCTGTAGATATTTCGGGAACAAGCAAGCTAGAGGTCGAAAATGCACGATTAAAAGCTGAACTGGCTTCTGCAATTGCTCTCATCTGTACTTTTAATGCTGAAATTGGATATGAATCCTTTAGTGAAGTAGAGTTGGACAATCTGCTTAAAACCATGAAGGATAAGACAGCTGAGGCTCTGCATTCTAAAGATGAGTATATACATCATATCCAGTCAATTCTTAACATGAAGCAGACTCAATGCCTGACTTATGAAAAACGTATTCACGAGCTTGAGCAGAAACTGGCAGATGAATATAATGCAGGACAGAAGGCTTCAACCAATAAAATTGCTTCTGAGTCATTAAATTCTGCATCGAAGATTGATGGCTACAGAGATGATATATATGGAGATGAAGAGGCTCCCAATGCATGTGTCTCAACTGTATCAATGGAAGAGGCATCTTGTACATCAGCTTCTGTCGATCCAAGATTTGATCTTACAAATATACAGCAAGAAAAACTTGGAGAAGGGACTGATGAAAACATGATTGATTTTTCAGGTATGCAGAATTTGAACTATGTAGATTCTTCACATAAGGTTATAGATGCATCCATGTTGGAACAATCCCATGATGATCACCAAGCTGGTGATGATAAAGAGAGGGCCAGTGAGGCATACAAAGATGAAACTAGTGAAACAGATAGGGCATCAGTAAAAAAAGCATCTCAGTTTAATTTGACAGCAGATAATTCTGATGTTGGCACAGGGGCCGTTAACATGTTCCAAGGTGGAATTGTATCTGAACTTAGTTTGGAGTCAAAAACAAGTGATCATGTTTCGTTAGACCTTCAGACTGCTCTTACTGAAAGTTCTAGCCAGTTTGCTATATCTGAAAACAAGCTCAAAACTGTCTTGGAGGACATTTGTTCTCTCAAAAGGGAACTTGAGATTAGGCGAAATCTTCTTGATGAATCTCAGATGAATTGTGCTCATTTAGAAAACTGTCTGCATGAGGCAAGAGAAGAGGCACGCACTAATTTATGTGCTGCTGAAAGACGGGCATCAGAGTATAATGCTTTGAGGGAAACTGCTGTGAAGATGCACGGTTTGTTTGAAAGGTTTCGTAATTGTGTCACAGGGTTGGATGGATCAATTAATTTTGCTGACTCTCTGAGATCTTTTGTTCATTCCTTGGGAAGCGGTTCTGCTGATGAAGATGATGACGTCTCTGCCAGTTTCCGCACATGCATTCTTGTCATTGCTGACAAAACTGGCATTTTATTCCGTCGCGTGGAGCTTCTTACGAAGCAAGCGGAGGACCAAAGAGAATTGATTAAAACCTTGTATAGAAAGCATCAGCTTGAAAAACAGGGAAGCAAGGAAAAGATATCTTTTCTCCACATGGAAGTTCATGAGCTTGCTGCTTTCGTTTTAAATGCTGCCGGGAATTATGAAGCGATTAATCGAAACTGCCCGAATTATTACCTCTCCCCAGAATCTGTGGCCCTCTTCACGGAACATTCAAACAGGCCAAGTTACATAGTTGGTCAGATTGTGCACATTGAGAAGCAAATTACGAGGCTGCTACCCTCCCCTCAGGTTAGCCAGGTTGATCTAGGGGAGTCTATTTGCGTTGAGAGCGCTAATAGGCTCCCTTCAGTGACCGGGAAACTTTCTTCTAACACTTTTGGGCTTCCTGTCGGTTGTGAATACTTTATAGTAACAGTTGCTATGTTGCCTGATATCATTCATTCTACACCTTCCTGA

Network for GWHGAAEX007977

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10377.8	ATG11	1003	1151	1.50E-16

Protein Sequence

>GWHPAAEX007977
MSSRSIISTDEFVPGRRLLVHIAENGHSYEFECDGLTVVEAIQMSLESLCGVHISDQLLLCGNTSLDSQQTLAYYKLPQDDREVFLYNKSRLHADSPCPSPETIDIPNVSIPTPVSPSLNPHPLDEASDPALKALALYERQFRFHFQYANAIYGYTRTKFEVCRRLFREKQVQERALETARRNLDHTFRKLQQRYTEFIRHFKHQHRFHSEQLNKFERDVERLRSVMLLPLLQSDSRKCLLDLVKETDLRKWADNCFNSHKQFENKVSQLKLNFGELNRRVGNVFLDMESVGSKDLELMMKGHQTIFSDQKSIMQSLSKDVNTIKKLVDDCLNYQHSGSLRPHDAISALGPMYEVHEKTHLPKVQSCDHAIAKLLEKSLAKKNEMNTVVHLCMQKVKSAQFSIKDMMNELHAFQEVLGHKEKEFDNLKLVNGICHAYRACLAEVVRRKSSLKLYMGLAGQLAERLASEREAEIRRREGFCKAWEKYIPHDILSSLGLFDSPSQCDVNIVPFDTNLIDIDVGDVDRYAPQSLIGIQPRFENSKSPGNYTAISITSNLTTSEENPVASCEDAKFEDLIEGCLPVDISGTSKLEVENARLKAELASAIALICTFNAEIGYESFSEVELDNLLKTMKDKTAEALHSKDEYIHHIQSILNMKQTQCLTYEKRIHELEQKLADEYNAGQKASTNKIASESLNSASKIDGYRDDIYGDEEAPNACVSTVSMEEASCTSASVDPRFDLTNIQQEKLGEGTDENMIDFSGMQNLNYVDSSHKVIDASMLEQSHDDHQAGDDKERASEAYKDETSETDRASVKKASQFNLTADNSDVGTGAVNMFQGGIVSELSLESKTSDHVSLDLQTALTESSSQFAISENKLKTVLEDICSLKRELEIRRNLLDESQMNCAHLENCLHEAREEARTNLCAAERRASEYNALRETAVKMHGLFERFRNCVTGLDGSINFADSLRSFVHSLGSGSADEDDDVSASFRTCILVIADKTGILFRRVELLTKQAEDQRELIKTLYRKHQLEKQGSKEKISFLHMEVHELAAFVLNAAGNYEAINRNCPNYYLSPESVALFTEHSNRPSYIVGQIVHIEKQITRLLPSPQVSQVDLGESICVESANRLPSVTGKLSSNTFGLPVGCEYFIVTVAMLPDIIHSTPS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08330	ATG11	Autophagy - yeast	map04138
		Autophagy - other	map04136
		Mitophagy - yeast	map04139

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	28.800
SRP064423	SRR2545915	Juvenile tuber	22.460
SRP108465	SRR5643513	five period of Gastrodia elata	13.820
	SRR5643514	five period of Gastrodia elata	15.090
	SRR5643515	five period of Gastrodia elata	14.010
	SRR5643524	five period of Gastrodia elata	16.740
	SRR5643525	five period of Gastrodia elata	18.840
	SRR5643528	five period of Gastrodia elata	16.330
	SRR5643658	five period of Gastrodia elata	21.860
	SRR5643659	five period of Gastrodia elata	14.100
	SRR5643660	five period of Gastrodia elata	14.680
	SRR5643661	five period of Gastrodia elata	14.530
	SRR5643662	five period of Gastrodia elata	12.930
	SRR5643663	five period of Gastrodia elata	14.060
	SRR5643664	five period of Gastrodia elata	12.240
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.430
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.900
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.060
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.520
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.430
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.850
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.720
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.310
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.120
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.100
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.160
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.160
SRP279888	Gastro	Gastrodia elata tuber	12.70
	Juven	Juvenile tuber	17.67
	Mother_Gastro	Mother tuber of Gastrodia elata	20.25
	Mother_Juven	Mother tuber of Juvenile	21.32