Detail information of GWHGAAEX007988/evm.TU.scaffold_209.17


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|330469520|ref|YP_004407263.1|2.00E-09alpha amylase domain-containing protein [Verrucosispora maris AB-18-032]
nrgi|297740222|emb|CBI30404.3|7.83E-45unnamed protein product [Vitis vinifera]
Swissprottr|Q6ZY51|PWD_ARATH9.00E-08Phosphoglucan, water dikinase, chloroplastic (Precursor)
trEMBLtr|M0T8Z5|M0T8Z5_MUSAM7.00E-42Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P21470_001}
TAIRAT5G012601.00E-33Carbohydrate-binding-like fold

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000207947081951764-
Transcript Sequence

Network for GWHGAAEX007988

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00686.18CBM_20881724.50E-18
Protein Sequence

Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCBM20

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0030246Molecular Functioncarbohydrate binding
GO:2001070Molecular Functionstarch binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms249.530
SRR2545915Juvenile tuber431.850
SRP108465SRR5643513five period of Gastrodia elata681.260
SRR5643514five period of Gastrodia elata570.190
SRR5643515five period of Gastrodia elata906.090
SRR5643524five period of Gastrodia elata536.200
SRR5643525five period of Gastrodia elata65.040
SRR5643528five period of Gastrodia elata60.770
SRR5643658five period of Gastrodia elata41.150
SRR5643659five period of Gastrodia elata303.740
SRR5643660five period of Gastrodia elata187.900
SRR5643661five period of Gastrodia elata264.510
SRR5643662five period of Gastrodia elata618.280
SRR5643663five period of Gastrodia elata552.320
SRR5643664five period of Gastrodia elata296.450
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11687.960
SRR6049655Rhizomagastrodiae_C368-T10_good_1957.200
SRR6049656Rhizomagastrodiae_C368-T07_good_11970.120
SRR6049657Rhizomagastrodiae_C368-T07_good_11193.700
SRR6049658Rhizomagastrodiae_C368-T04_good_11398.720
SRR6049659Rhizomagastrodiae_C368-T04_good_1860.860
SRR6049660Rhizomagastrodiae_C368-T01_good_1610.400
SRR6049661Rhizomagastrodiae_C368-T04_good_11658.760
SRR6049662Rhizomagastrodiae_C368-T01_good_1881.560
SRR6049663Rhizomagastrodiae_C368-T01_good_1507.920
SRR6049664Rhizomagastrodiae_C368-T10_good_1747.460
SRR6049665Rhizomagastrodiae_C368-T10_good_1747.460
SRP279888GastroGastrodia elata tuber 387.08
JuvenJuvenile tuber377.04
Mother_GastroMother tuber of Gastrodia elata 54.78
Mother_JuvenMother tuber of Juvenile 94.09