Detail information of GWHGAAEX007991/evm.TU.scaffold_209.23
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|338175150|ref|YP_004651960.1| | 6.00E-25 | hypothetical protein PUV_11560 [Parachlamydia acanthamoebae UV-7] |
| KOG | KOG0789 | 4.00E-126 | Protein tyrosine phosphatase |
| nr | gi|266706161|gb|ACY78390.1| | 0 | protein tyrosine phosphatase 1 [Phalaenopsis amabilis] |
| Swissprot | tr|O82656|PTP1_ARATH | 1.00E-126 | Protein-tyrosine-phosphatase PTP1 |
| trEMBL | tr|D1M7B3|D1M7B3_PHAAB | 0 | Protein tyrosine phosphatase 1 {ECO:0000313|EMBL:ACY78390.1} |
| TAIR | AT1G71860 | 4.00E-126 | protein tyrosine phosphatase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000207 | 1178110 | 1195514 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007991
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00102.26 | Y_phosphatase | 92 | 331 | 2.40E-69 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006470 | Biological Process | protein dephosphorylation |
| GO:0016311 | Biological Process | dephosphorylation |
| GO:0004725 | Molecular Function | protein tyrosine phosphatase activity |
| GO:0016791 | Molecular Function | phosphatase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.850 |
| SRR2545915 | Juvenile tuber | 17.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 27.920 |
| SRR5643514 | five period of Gastrodia elata | 32.910 | |
| SRR5643515 | five period of Gastrodia elata | 27.100 | |
| SRR5643524 | five period of Gastrodia elata | 31.780 | |
| SRR5643525 | five period of Gastrodia elata | 22.030 | |
| SRR5643528 | five period of Gastrodia elata | 20.930 | |
| SRR5643658 | five period of Gastrodia elata | 19.970 | |
| SRR5643659 | five period of Gastrodia elata | 22.380 | |
| SRR5643660 | five period of Gastrodia elata | 21.150 | |
| SRR5643661 | five period of Gastrodia elata | 22.380 | |
| SRR5643662 | five period of Gastrodia elata | 19.960 | |
| SRR5643663 | five period of Gastrodia elata | 19.630 | |
| SRR5643664 | five period of Gastrodia elata | 18.230 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.230 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 28.120 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 25.760 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.950 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 21.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 22.880 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.900 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 29.510 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 24.210 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 29.690 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 29.690 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 24.55 |
| Juven | Juvenile tuber | 36.18 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 35.04 | |
| Mother_Juven | Mother tuber of Juvenile | 34.81 |