Gene detail

Detail information of GWHGAAEX007998/evm.TU.scaffold_21.8

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0120	6.00E-77	Splicing factor U2AF, large subunit (RRM superfamily)
nr	gi\|743779707\|ref\|XP_010920327.1\|	0	PREDICTED: uncharacterized protein LOC105044207 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q2QKB4\|U2A2B_WHEAT	2.00E-24	Splicing factor U2af large subunit B
trEMBL	tr\|A0A067L8D4\|A0A067L8D4_JATCU	1.00E-146	Uncharacterized protein {ECO:0000313\|EMBL:KDP40369.1}
trEMBL	tr\|A0A067L8D4\|A0A067L8D4_JATCU	2.00E-09	Uncharacterized protein {ECO:0000313\|EMBL:KDP40369.1}
TAIR	AT2G33440	6.00E-77	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000022	130333	165022	-

Transcript Sequence
>GWHTAAEX007998 GTACTTACTAGTCATAATCTAGAGCTGCACGCATTGATGCTGTTTTTCTATTCTGGTTCTCGAGAGTGGATGTGCGAGGGAAATAATTATTTGTGTTGGGAATTTTAATTAATCGTGTTCCTTCTGAAGTTTTTATAGCCATTTTCTTTCGGGAATCGAAATGGTTTTCGTCCAATATTTATCAATTTTGGTTTGAGCGAGTTATTACAGTGCCTTTCTCTTGCGTTAGTGGCGTCATCAAGTTGCATGGTAGGCGGGTGAAGATGAAAAACTATTTTTTGCGGAAGACATGAACAAATGGGAAGAACAGATGCAAACAAAAAGGGATCTAGGAGAAATCCTAATGAGGGCACTTCAGCTCGAACAAGAGCTTTTAGTTTTGAGGAAATTATGTCAAGGAGAAGGATGAAACAAAACTCTACTAATGAAAAGGACAGCATAATACAGGAGTCTTTGAAAAACATGAATGATACCTCAGATTACACAGGCTCTGATATTTGTCATGGTATCAGTTCTTTGAAAGACTTTGTGAAAGAGAGTTTCAAAAAGGAAGAATCAAGCTCAAAAACAGTGAGAGATATCACTGAGAGGAAATATGCAAATGCATCTGATGTAGAAGCTGGCATGAAGGTTAAGTCTATTCTTGGTAAGAACCGAAGAAACACAGAAAGTACAGATGAAAAATACAACCATTATTCAAGTAAAAATGCTAAGTTACCTTCGTCTGAATCTAAGAAGGCATCTGGAAAGAAAAGGATGAAAAATATTGAGGAGAAGGATGAGTGTAATGAATATGATGAGTATTATAGAAAATCGAAGAGGGATAGAAAAGGTGATAACAACATTGATTATAGTAGTAGATTTGAAAAGGATGCTAAGAAATCTAAAAAGCACGAGTCTGCCAAATTACGGGATTCAAAGCATTCAAAACGGAAAGTTCATAAGAAATATCACACTGAATCCTTCTATGAAGATACTAGATTGGGAAGGGAAAACTCTAGAGGCCTCGAATATGATCAACAAGGAGGAAGGCCTGCTTCTAGGTCTCCTTTGTCACAAAAACATATCTACCACACAAAAGACCATGGTCAGTCCCATAAAAACAATTCAAAGAAGAAACATTCAGATGGTGATAGGTACAAAACTTCAGGTAATGATGGATATTCTAGTAGACATCACCGCAAACATGGAAGTGGACTTGGTGGATATTCACCCAGGAAGAGAAAAACGGAGGCAGCTGTTAAGACCCCATCGCCGACAATTCGTTCTCCAGAGAGGAAAGTTCCTACATGGGATCAGCTTCCCTTGAGAACAAGCGTTGCTAATGCAGGACCCATGTTTACAGTTTTCCCTTTGACTGTTAACAACCTTGTTGAAACTGTATCATTCAACACCATTACACCAGCTACAACAAAAGCACGCCTGACAACTTCAAATGACTTGCAGCCTGTGGTGACAAATGCATCAATTGAGTCTGTTCAGCTCACCCAAGCAACCCGTCCTATGAGGAGGCTTTATATTGAAAACTTACCTTCATCTGTAACTGAAAAATCAGTGGTTGATTGCCTCAATGAATACTTGGTGTCAACCTGTGCCAATCGTACTCGAACAATTAGACCTTGCATCAGTTGTATCATAAATAAAGACAAAGCTCAGGCCCTTGTTGAATTTTTGACACCAGAGGATGCTACTGTAGCTCTTTCTTTTGATGGCAACTCTTTTGCTGGATCGGTTCTCAAAATGAGGCGCCCTAAAGATTTTATTGAAGCAGCAAGTGGAGTTCCTGAAAAAAGCAGGGACGTCAGGAGTGTGTCTGATGTTGTCATCAATTCCCCTTACAAGATTTTTGTCAGTGGAATTTCAGGCTTTCTCTCATCCGAGATGCTCATGGAAATAGCCAGTGCTTTTGGGCTGCTGAAGGCTTACCACTTTGGCTTCAACAAGGAGCTCAATGGTCCATGTGCTTTTTTAGAGTATGAAGATCATTCCATCACCCCCAAGGCCTGTGCTGGGCTTAATGGATTGATGCTGGGCGGCTGCATTCTTGCTGCAGTTAAAGCTTATTCTGATGCCAATGGAAATGGAAAGGTGGATGATACAAGCCCTCCTTCCTACGACATTCCTCCTCATGTAAAGCCGCTTCTCGCCGACGTCACACCCGTCCTTAGGCTTCAGAATGTGATCAATCAGGAGGACCTTTCTACTTCATCAGAAATTGAATTGGAAGAAACCTTAGAAGATGTTCGATTGGAGTGTGCCAGATTTGGGACTGTCAAGGCTGTGCGCTTGGTGAGACATCGCCACAATATCAACGAGCCGAAGTTCAAAGCATCAGAACCCTCAGATTCTGCGTCGGAATCGAACACTGGCCTTCATAATGGGAAGAATACAGAAAAGTCTAGAGAAACCTCAGCTCCAAATAATGGCGAGGAGCATGAGAATGCTAAAGTAGAAGAAGATGATGAGCACGCAAATTCATTAGAAGATTCCGCTGCCGCGAATAAAGATGAAGACGATGACGGGCTAAGAAGAGCGGTCGAGGGTTCGGTGGAGCGGCCGGCCCATGCTTTGGAAATCTTTGAACCGGGTTCGGTTCTTGTGGAGTTTCAAAGGAGAGAGGCGACCCGGCTTGCGGCTCACTCTTTGCACGGCCGATCGTACGGCGACCGGACTGTCACGGTCGAATATGTTCCCCACAGTGCCTATCTCGAAAGATTCCCCGAATGAGATTTTGTATGCTATCTATAGTAATATCTTTATATATATAGTTTTTAGAATGAAATATAAAAAATATTGAAATCATTTTATATTATAAGTCTTGACATCTATAGTTTTTCATATTCATCTTTATATGATCTCTTTTCAAAAATGTTAAAAAAATTTAGATTTGAGATAATAACAAAGCATAAAATTGAAATATGAACCGGTTTGCAGCAGCCCAATGAATTTGGGCTGAACAGAGTCATGTACGAATATAATGTCTTCTGCATCTTTC

Network for GWHGAAEX007998

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12837	U2AF2	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	77.330
SRP064423	SRR2545915	Juvenile tuber	68.560
SRP108465	SRR5643513	five period of Gastrodia elata	17.270
	SRR5643514	five period of Gastrodia elata	16.250
	SRR5643515	five period of Gastrodia elata	19.740
	SRR5643524	five period of Gastrodia elata	15.940
	SRR5643525	five period of Gastrodia elata	19.320
	SRR5643528	five period of Gastrodia elata	18.140
	SRR5643658	five period of Gastrodia elata	25.960
	SRR5643659	five period of Gastrodia elata	26.000
	SRR5643660	five period of Gastrodia elata	33.130
	SRR5643661	five period of Gastrodia elata	24.840
	SRR5643662	five period of Gastrodia elata	27.880
	SRR5643663	five period of Gastrodia elata	28.210
	SRR5643664	five period of Gastrodia elata	33.630
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	32.890
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	31.710
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.220
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	46.660
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	36.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	43.410
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	36.240
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.170
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.850
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.900
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.360
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.360
SRP279888	Gastro	Gastrodia elata tuber	23.47
	Juven	Juvenile tuber	22.91
	Mother_Gastro	Mother tuber of Gastrodia elata	17.50
	Mother_Juven	Mother tuber of Juvenile	23.71