Gene detail

Detail information of GWHGAAEX008003/evm.TU.scaffold_21.13

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743829801\|ref\|XP_010934244.1\|	4.78E-131	PREDICTED: protein PHR1-LIKE 1-like [Elaeis guineensis]
Swissprot	tr\|Q8GUN5\|PHL1_ARATH	5.00E-63	Protein PHR1-LIKE 1
trEMBL	tr\|B9SKP0\|B9SKP0_RICCO	4.00E-112	Transcription factor, putative {ECO:0000313\|EMBL:EEF35837.1}
TAIR	AT4G28610	6.00E-65	phosphate starvation response 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000022	281143	312292	-

Transcript Sequence
>GWHTAAEX008003 CTTTAGTGGCTCACTTAAATCCTATTCCAAATCCTATTCCAAGGCGAAGATATAGTTGGCTTTGGAGCCCCGAACGCGTCGGAATATTGCTTTTCTCTCGGGCGGCCGCCGAGGAAAGAGAAAGCACTAATCGAGGAAGCCCTCCATGCTCCTTCTCCCCGCCTCCCTCGATTTCGGGTTGTGTCCCTGATTTATGACAGCATAATGCTGTTCACAATTTATCATTAAAATGTGGGCAATGAATATATGTGATATACAAAGAATCCAGATCATAGCAGGGAATGGAAGCCCACCAAGCTCTTTCTACGAATCCTCTGCAAGTTTTAATGGACAAGGAGTTGAAAAGAAATTCTATTGCCCCTCATCAGCCCTCTTTTGCCTATAACAATGGTTTTGTGGGACCTTTATTCTCATCAACTCTGGGATCCTCTTCTGATATTCAGTACTCTTCTGTTGCCCATCAGGGGAGATATTCTAATGGCGCTCTATTTATTTCTCAACCAGCAAGCTGTGAAATGCCCATACATTTACCCCAAGTGCGTTCAGGAGCATTTCAAGCTTCAACAAGCCACTGCTCTTTAGAAGATACTGGAATGTCTTGGGTTCCAGAGTCCATTAATGATTTCATTAGCTATCCAGATAGTTTGAATATAGGGAGCAACCAGATCCAGAGTAATCCTAACAATCATATCAGTACCAGTACTATTACAGCTTCTGATGATCTAACTAAGCAAAATGAATGGTGGGATTTGAGCAATGATGATTGGAAGGATCTTCTGAATGATTCAGCTGGAACTGAAAATCAACTCAAGGTCCTCTGCCAGCCATCTCAAGATACTTCATTAAACACATCAGTGCCCCAAATGCATGTTCATCAGCAGATATCTTCACATTCTAGGGAGTTGTGCATTGTCTCTAGCCCACCATCATCAAGCAATGGAGCTCTACCTAGGCCACGCATGCGGTGGACCCCAGAACTCCATGAACGTTTTGTAGATGCTGTTAATCAGCTTGGTGGAAGCGAAAAGGCCACACCTAAAGGTGTCCTCAAGATTATGAAGGTTGAAGGATTGACCATATACCATGTGAAAAGTCACCTTCAGAAGTACAGAACTGCACAATTCCGTCCAGAATCGTGTGAAGGGAGTTCTGAAAAGAGGGTATATCCACTTGATGAAAAATCATCATTAAACCTTAAAACAGGAATGGAGCTTACAGAAGCTTTGCGCTTGCAGATGGAGGTTCAGAAACGTCTTCATGAACAACTTGAGGTCCAAAGAAATTTACAGCTACGAATAGAAGAACAGGGAAGACACCTCCAAATGATGTTTGAACAACAATACAAAGTGGGGTTAGACAAGTTCAGGCCATCTTCTGGTCAGGAAGAGCAGACGCCCCAATCTTGGGACACAACAACACCCTCTCCTTCTACAAGTGATGCCTTTGAGAAAGATAGGGACAGCAAATGGATTGATCTCTCTTCTTCCAAAGTTACAGAGGAAAGGCTTAGGGTAGAGGGCAGCAATAAAACAATGCCTGATTCAGAGTTTTCTTGTACTTTAGAGGACATTGCCCTTCTCGGGCCAAAGTCTCCCGAAAAAAGTGCGTGCGAAAGGTGATGGTAGAAATCTGATCAGTGAATGATCAGTGGGCTATGCACCAGCTCATGAACTAAAGTGATTGATCAGATCAGTAAACGCAACAGAATATTTCTTTCTCAGAAGATGACAGTTAAATCTTCTGCTTATGAGGGCCTCCTCTTGTTTTAATTAAATAATTGTAGTCTATCTTTCTTTTCTTATCTTGAAACAAAGCTTTGAACAATCAATTTTCTATTGGTGGGGAGGTATGTTTTCTTAGCAAGTTAATATTGTTATTCAATTTCTTTATAGGTTACAGTTTGATAGGGATAAAGGGATCCTTTCATGAATACAATAATGCATATGCATAGAGTTAGTCTTATCAA

Network for GWHGAAEX008003

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	226	277	4.60E-10
PF14379.5	Myb_CC_LHEQLE	309	355	1.50E-22

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	145.380
SRP064423	SRR2545915	Juvenile tuber	101.850
SRP108465	SRR5643513	five period of Gastrodia elata	40.720
	SRR5643514	five period of Gastrodia elata	38.620
	SRR5643515	five period of Gastrodia elata	42.650
	SRR5643524	five period of Gastrodia elata	37.050
	SRR5643525	five period of Gastrodia elata	35.090
	SRR5643528	five period of Gastrodia elata	35.520
	SRR5643658	five period of Gastrodia elata	34.450
	SRR5643659	five period of Gastrodia elata	47.150
	SRR5643660	five period of Gastrodia elata	51.640
	SRR5643661	five period of Gastrodia elata	56.410
	SRR5643662	five period of Gastrodia elata	53.600
	SRR5643663	five period of Gastrodia elata	53.720
	SRR5643664	five period of Gastrodia elata	57.570
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	46.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	36.590
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	38.590
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	62.450
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	58.530
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	72.530
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	56.180
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	48.060
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	35.250
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	43.820
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	31.920
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	31.920
SRP279888	Gastro	Gastrodia elata tuber	46.85
	Juven	Juvenile tuber	50.54
	Mother_Gastro	Mother tuber of Gastrodia elata	43.78
	Mother_Juven	Mother tuber of Juvenile	52.69