Gene detail

Detail information of GWHGAAEX008005/evm.TU.scaffold_21.15

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2164	2.00E-159	Predicted E3 ubiquitin ligase
nr	gi\|743813316\|ref\|XP_010929676.1\|	0	PREDICTED: RING finger protein 10 [Elaeis guineensis]
trEMBL	tr\|M0T8Q4\|M0T8Q4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P20560_001}
TAIR	AT3G26730	2.00E-159	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000022	380271	456531	-

Transcript Sequence
>GWHTAAEX008005 AAATTTAGTTTTTGTCCGCGTATTAGTCAGCTCCTCTGATTCAGTATAAATTTCTTTTTTCCAGAAGCCAGAGCTTCATCTGCCACAACGATTCTCCTAACAGGTATCCGTCTTCTCGTTCATGTCCATCAGCCCAACTGTCGCTCAAAGATCATTTTCCAATAATTCTCTTCGTGATCCCGAACAAAGCCCTAACTCGCGACATGGCTTGCTACCGTCTCACCAGGGCTGTGGCCCTTTCGGGCCGAGGACCAGCATGCCCTCTTCGTCCTCAACGGGATCGGCTCAGGATTCCCCCACAGGATCATCAAGTGGCTACCCAATCGACATATTTGGAGCAAATCATGGAAGTTTCCAAGATACGTCTGGTGCATCAAACAATGTGAGGGAATCCAAGGGCTCAAATGTTAGGAAACACTCTAGTGGCCATTCTTTTAGTCCAAGAGGTAGTTCTCAGCTCAGATCGAACAGGCTTGACACACAATGCGATGTAAAATTGGCTGCTATGCCAGTATCTGATCACTGGTCTTTAGACTCCTGTGACGCTCAAATTGCTGCTGTTCAAGTTTCTTCAAGAAGAAAAGAGGTCCTGAATGCTAATCATTTGCTGAACTTTCATTATAACTCAACTCCTCGGGTTCGCCAACAGCATGAAATGCCTCCTTTAAGAAGGCAGCAAAAGGTAAAGCCTTACAACAAGGATCTCTTCCTCCAGGCGAACTACAAATTTGTTATATACGATTCAGGAGACTATTCCATTGAGTTAATTGATCCTGATAAAATGTTTCCTTGGGAAGATGTTGTCTGTGTTATTTACTCCACTCCAACTTCTGTACAATGTCCAATTTGCTTGGAAAATCCTCTTTGTCCACAAATAACATCATGTGGTCATATATATTGTTTCCCTTGTATATTGAGGTATTTGCTAACTGGAGTTGAGGAACATAATTGTGAATCCTGGAAGAAGTGCCCATTGTGTTTTTCAATGATATCATACAAGGATTTGTATACAATTAGGATTGACAATGTTAAGCAGTTTTGTGTGGGTGATTTTGCAGACTTTGCACTATTGGTTCGAGCAAAAGATTCACAAATTCCCTTGTTTAAATGTCAGAATGGAGCAGACGTTGAGCCTACCTACTTTGACAATACTTCCGATTTGTTTTCAAAATTTATTTTGAGCTCTGATGTTGACTTGTCAGTACGAGATGCCAAGGCATGTCTTACTGATTGGTTATATAAAACAGAAATGGGCATAGTTGATGACTTGGAAAAGCATCCATACGTTTGTACTGCATTGGAACAATTAGAAGAAAGGATGAAGAGATGGATGGCAAACCGAGTTCTTAATGAAAGTTCTCATCAACTTAATCATTGTGCACTTTCGGGCAGTAAAGTCATGCATCGCCCTAATTCATTAAAAGCCTGTTCATTGAATTCAAATTTAGATGCAGAGCATACTCACTCCGATGTATGGATGGCTACAATTTCTGGTCTGATTCATGAGAAGCTCGAGTCTTCTGGTTCTTCTCCTCCTTTCAAATCTGCAGGTTCTTCAGAACTTTTGCATGTTGAGGAGAAAATTGCACTAATGGATTCTAGTACTTCCAAGGATAATAGGGAACGAAGCTCATATTCTTTCTATCAGGCAATCGATGGTCAGCCATTAATTCTTCATCCACTGTGTATGAAGTGCCTTCTGCACCATTTTAGAAGCTATGATATGCTCCCACTAAGAATCAGTGGAAAAATTTTAGAGTTGGAGACAATTACTCAGTCAGAAGCCATGAGGAAACGCTATCGGTACCTAAGTCACTTCTCGTTAACCACTTCATTTCAGCTCTGTGAAATTGAACTTACTGAAATCTTGCCCTCTGCTTCTTTGGCGCCGTTCATTGATGAAATAAGGAAACGTGAAAAGCATAGAAAGCATCTTGCGAAGAAGGAGAGAGCACAGAAAGCCCGGGCTGAAGCTGAAAGCTGTGCTGAAGCTGCTTCTTTACGGGAAATGCTTAATCCTACAAATCAGAGATATTTAGGTGATAAAGATACAATTTTCTCGCTGGATGCATTTGAAGCACTCGGGAGTGGGATTATGCCAACAATAAACTCTTCTATGAGTAGTACAAGGAAACTGTTCTCCAATGTAACTCGCCTTGGATTTGCAGCTGCTCATGATTCTCCAGACCTAGGATCTGAGGAGTCAGCTAAGTTATCAGTTAGCATAGATGCTACACAGAAAGCTTCTGGTTCTCAAGGCCAAAGGACTGCTGCTACGCCATCATTTGCTAACATCTTGTCAGCCACGAAAAGAGAGGTACAGAGCTCAAACGGAACGCCCAGGAAAGGAAAGAAACCCAACAGGGTCCTCCTCTCTACTGCAGGCGGGAGGAGGTATTAAATGAAAATACATAGGAGGATGGATTTCTTTGTCAACTTTATTAAAAAAGATTATATCCTTTTTTCTCCTTGAACATGTTTTTTTTCTTCCCATTGAAAATTCTTTTTTTATTATTATTATTATTTTTCCTGTTCATGTATTTTTGTGTGACAGCAAAGTTAATTTAACGAGTATCTTAACTTGAATTCTGATGGTTCTAGCTCTGCGAGTTGTGCTTGCTTACGATTTTAGAGCATCGGATGGAGTCGGAAATTTTTTTTTTGTTATTTTGGCATAAAACTTCTTCTGATTCGATTGTTAAAAAC

Network for GWHGAAEX008005

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00097.24	zf-C3HC4	240	286	1.20E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	Molecular Function	metal ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	61.890
SRP064423	SRR2545915	Juvenile tuber	53.730
SRP108465	SRR5643513	five period of Gastrodia elata	27.290
	SRR5643514	five period of Gastrodia elata	30.430
	SRR5643515	five period of Gastrodia elata	24.160
	SRR5643524	five period of Gastrodia elata	25.020
	SRR5643525	five period of Gastrodia elata	43.810
	SRR5643528	five period of Gastrodia elata	51.970
	SRR5643658	five period of Gastrodia elata	58.720
	SRR5643659	five period of Gastrodia elata	34.220
	SRR5643660	five period of Gastrodia elata	38.640
	SRR5643661	five period of Gastrodia elata	32.590
	SRR5643662	five period of Gastrodia elata	41.340
	SRR5643663	five period of Gastrodia elata	43.050
	SRR5643664	five period of Gastrodia elata	43.470
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	94.460
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	66.350
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	117.170
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	105.270
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	196.240
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	203.190
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	157.690
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	183.970
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	98.580
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	155.040
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	66.710
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	66.710
SRP279888	Gastro	Gastrodia elata tuber	224.48
	Juven	Juvenile tuber	46.01
	Mother_Gastro	Mother tuber of Gastrodia elata	73.55
	Mother_Juven	Mother tuber of Juvenile	67.22