Detail information of GWHGAAEX008010/evm.TU.scaffold_21.20


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|305663447|ref|YP_003859735.1|3.00E-1650S ribosomal protein L21E [Ignisphaera aggregans DSM 17230]
KOGKOG17325.00E-10560S ribosomal protein L21
nrgi|672144976|ref|XP_008796392.1|3.28E-109PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
Swissprottr|Q43291|RL211_ARATH2.00E-10560S ribosomal protein L21-1
trEMBLtr|A0A067G5K5|A0A067G5K5_CITSI4.00E-109Uncharacterized protein {ECO:0000313|EMBL:KDO70857.1}
TAIRAT1G096905.00E-105Translation protein SH3-like family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000022600556605257+
Transcript Sequence

Network for GWHGAAEX008010

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01157.17Ribosomal_L21e5995.40E-45
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02889RP-L21e, RPL21 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms316.850
SRR2545915Juvenile tuber397.450
SRP108465SRR5643513five period of Gastrodia elata691.970
SRR5643514five period of Gastrodia elata726.680
SRR5643515five period of Gastrodia elata676.610
SRR5643524five period of Gastrodia elata721.910
SRR5643525five period of Gastrodia elata318.340
SRR5643528five period of Gastrodia elata401.520
SRR5643658five period of Gastrodia elata303.230
SRR5643659five period of Gastrodia elata666.560
SRR5643660five period of Gastrodia elata665.530
SRR5643661five period of Gastrodia elata768.830
SRR5643662five period of Gastrodia elata563.390
SRR5643663five period of Gastrodia elata556.550
SRR5643664five period of Gastrodia elata556.120
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1577.750
SRR6049655Rhizomagastrodiae_C368-T10_good_1630.420
SRR6049656Rhizomagastrodiae_C368-T07_good_1665.850
SRR6049657Rhizomagastrodiae_C368-T07_good_1500.590
SRR6049658Rhizomagastrodiae_C368-T04_good_1505.240
SRR6049659Rhizomagastrodiae_C368-T04_good_1408.780
SRR6049660Rhizomagastrodiae_C368-T01_good_1589.870
SRR6049661Rhizomagastrodiae_C368-T04_good_1497.560
SRR6049662Rhizomagastrodiae_C368-T01_good_1759.700
SRR6049663Rhizomagastrodiae_C368-T01_good_1694.350
SRR6049664Rhizomagastrodiae_C368-T10_good_1876.410
SRR6049665Rhizomagastrodiae_C368-T10_good_1876.410
SRP279888GastroGastrodia elata tuber 747.81
JuvenJuvenile tuber840.85
Mother_GastroMother tuber of Gastrodia elata 476.13
Mother_JuvenMother tuber of Juvenile 457.97