Detail information of GWHGAAEX008011/evm.TU.scaffold_21.21


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|479129111|ref|YP_005069071.1|0glutamyl-tRNA(Gln) amidotransferase subunit B [Arthrospira platensis NIES-39]
KOGKOG24380Glutamyl-tRNA amidotransferase subunit B
nrgi|672144990|ref|XP_008796400.1|0PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Phoenix dactylifera]
Swissprottr|B9SQR9|GATB_RICCO0Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial {ECO:0000255|HAMAP-Rule:MF_03147} (Precursor)
trEMBLtr|A0A061ENK9|A0A061ENK9_THECC0Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial {ECO:0000256|HAMAP-Rule:MF_03147}
TAIRAT1G485200GLU-ADT subunit B

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000022606009645694-
Transcript Sequence

Network for GWHGAAEX008011

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02934.14GatB_N763643.90E-111
PF02637.17GatB_Yqey4035491.40E-49
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02434gatB, PET112 Metabolic pathways map01100
Aminoacyl-tRNA biosynthesismap00970

Gene Ontology

GO term OntologyName
GO:0016884Molecular Functioncarbon-nitrogen ligase activity, with glutamine as amido-N-donor
GO:0003824Molecular Functioncatalytic activity
GO:0016874Molecular Functionligase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms36.050
SRR2545915Juvenile tuber38.950
SRP108465SRR5643513five period of Gastrodia elata57.380
SRR5643514five period of Gastrodia elata47.550
SRR5643515five period of Gastrodia elata57.550
SRR5643524five period of Gastrodia elata55.090
SRR5643525five period of Gastrodia elata112.320
SRR5643528five period of Gastrodia elata94.300
SRR5643658five period of Gastrodia elata70.430
SRR5643659five period of Gastrodia elata26.500
SRR5643660five period of Gastrodia elata28.720
SRR5643661five period of Gastrodia elata49.230
SRR5643662five period of Gastrodia elata25.520
SRR5643663five period of Gastrodia elata27.600
SRR5643664five period of Gastrodia elata30.030
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_144.320
SRR6049655Rhizomagastrodiae_C368-T10_good_150.060
SRR6049656Rhizomagastrodiae_C368-T07_good_142.130
SRR6049657Rhizomagastrodiae_C368-T07_good_148.890
SRR6049658Rhizomagastrodiae_C368-T04_good_136.750
SRR6049659Rhizomagastrodiae_C368-T04_good_142.330
SRR6049660Rhizomagastrodiae_C368-T01_good_142.140
SRR6049661Rhizomagastrodiae_C368-T04_good_136.750
SRR6049662Rhizomagastrodiae_C368-T01_good_128.570
SRR6049663Rhizomagastrodiae_C368-T01_good_128.790
SRR6049664Rhizomagastrodiae_C368-T10_good_141.790
SRR6049665Rhizomagastrodiae_C368-T10_good_141.790
SRP279888GastroGastrodia elata tuber 46.64
JuvenJuvenile tuber65.87
Mother_GastroMother tuber of Gastrodia elata 60.60
Mother_JuvenMother tuber of Juvenile 53.12