Detail information of GWHGAAEX008013/evm.TU.scaffold_21.25
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|186681693|ref|YP_001864889.1| | 9.00E-30 | hypothetical protein Npun_F1222 [Nostoc punctiforme PCC 73102] |
| KOG | KOG0293 | 1.00E-171 | WD40 repeat-containing protein |
| nr | gi|672190025|ref|XP_008775134.1| | 0 | PREDICTED: WD repeat-containing protein 26 [Phoenix dactylifera] |
| Swissprot | tr|Q8W1K8|MUT11_CHLRE | 8.00E-13 | Protein Mut11 |
| trEMBL | tr|W5A526|W5A526_WHEAT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_1BL_AE2E8D119.1} |
| TAIR | AT5G43920 | 1.00E-171 | transducin family protein / WD-40 repeat family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000022 | 662610 | 680272 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008013
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 222 | 259 | 7.70E-05 |
| PF00400.31 | WD40 | 268 | 304 | 0.00017 |
| PF00400.31 | WD40 | 308 | 339 | 0.11 |
| PF00400.31 | WD40 | 443 | 479 | 0.0099 |
| PF00400.31 | WD40 | 486 | 522 | 5.30E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.670 |
| SRR2545915 | Juvenile tuber | 15.110 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.320 |
| SRR5643514 | five period of Gastrodia elata | 11.630 | |
| SRR5643515 | five period of Gastrodia elata | 8.630 | |
| SRR5643524 | five period of Gastrodia elata | 9.270 | |
| SRR5643525 | five period of Gastrodia elata | 11.870 | |
| SRR5643528 | five period of Gastrodia elata | 10.540 | |
| SRR5643658 | five period of Gastrodia elata | 11.000 | |
| SRR5643659 | five period of Gastrodia elata | 10.940 | |
| SRR5643660 | five period of Gastrodia elata | 12.910 | |
| SRR5643661 | five period of Gastrodia elata | 10.980 | |
| SRR5643662 | five period of Gastrodia elata | 14.590 | |
| SRR5643663 | five period of Gastrodia elata | 12.640 | |
| SRR5643664 | five period of Gastrodia elata | 12.780 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.950 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.840 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.040 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.100 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.240 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.270 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.860 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.220 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.220 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.460 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.020 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.020 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 19.95 |
| Juven | Juvenile tuber | 24.36 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 21.98 | |
| Mother_Juven | Mother tuber of Juvenile | 32.36 |