Detail information of GWHGAAEX008014/evm.TU.scaffold_21.26
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|53804863|ref|YP_113486.1| | 1.00E-06 | RNA-binding protein [Methylococcus capsulatus str. Bath] |
| KOG | KOG0107 | 2.00E-52 | Alternative splicing factor SRp20/9G8 (RRM superfamily) |
| nr | gi|743767628|ref|XP_010914080.1| | 4.95E-79 | PREDICTED: serine/arginine-rich splicing factor RSZ21A isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q6K9C3|RZP23_ORYSJ | 2.00E-65 | Serine/arginine-rich splicing factor RSZ23 |
| trEMBL | tr|J3LEN3|J3LEN3_ORYBR | 3.00E-72 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB02G31000.1} |
| TAIR | AT4G31580 | 2.00E-52 | serine/arginine-rich 22 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000022 | 696598 | 712605 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008014
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 4 | 61 | 6.80E-17 |
| PF00098.22 | zf-CCHC | 94 | 109 | 7.30E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12896 | SFRS7 | Spliceosome | map03040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 120.030 |
| SRR2545915 | Juvenile tuber | 192.470 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 99.710 |
| SRR5643514 | five period of Gastrodia elata | 110.170 | |
| SRR5643515 | five period of Gastrodia elata | 97.900 | |
| SRR5643524 | five period of Gastrodia elata | 101.190 | |
| SRR5643525 | five period of Gastrodia elata | 60.310 | |
| SRR5643528 | five period of Gastrodia elata | 48.460 | |
| SRR5643658 | five period of Gastrodia elata | 66.090 | |
| SRR5643659 | five period of Gastrodia elata | 153.580 | |
| SRR5643660 | five period of Gastrodia elata | 170.620 | |
| SRR5643661 | five period of Gastrodia elata | 149.440 | |
| SRR5643662 | five period of Gastrodia elata | 149.120 | |
| SRR5643663 | five period of Gastrodia elata | 194.460 | |
| SRR5643664 | five period of Gastrodia elata | 169.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 171.140 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 126.580 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 147.760 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 177.610 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 171.480 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 170.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 152.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 164.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 119.990 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 133.210 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 128.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 128.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 245.77 |
| Juven | Juvenile tuber | 181.65 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 106.36 | |
| Mother_Juven | Mother tuber of Juvenile | 143.60 |