Detail information of GWHGAAEX008024/evm.TU.scaffold_21.37


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|407451488|ref|YP_006723212.1|7.00E-79hypothetical protein B739_0712 [Riemerella anatipestifer RA-CH-1]
KOGKOG21020Exosomal 3'-5' exoribonuclease complex, subunit Rrp44/Dis3
nrgi|672126441|ref|XP_008786671.1|0PREDICTED: exosome complex exonuclease RRP44 [Phoenix dactylifera]
Swissprottr|P0DM58|DI3L2_ARATH1.00E-84DIS3-like exonuclease 2 {ECO:0000255|HAMAP-Rule:MF_03045}
trEMBLtr|A0A068EX93|A0A068EX93_COCNU0Exosome complex exonuclease RRP44 {ECO:0000313|EMBL:AID55111.1}
TAIRAT2G175100ribonuclease II family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000022863654922489-
Transcript Sequence

Network for GWHGAAEX008024

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13638.5PIN_4551775.10E-15
PF17216.2Rrp44_CSD12223172.20E-11
PF00773.18RNB4718019.70E-97
PF17215.2Rrp44_S18518942.70E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12585DIS3, RRP44 RNA degradation map03018

Gene Ontology

GO term OntologyName
GO:0003723Molecular FunctionRNA binding
GO:0004540Molecular Functionribonuclease activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms38.360
SRR2545915Juvenile tuber37.000
SRP108465SRR5643513five period of Gastrodia elata22.590
SRR5643514five period of Gastrodia elata23.550
SRR5643515five period of Gastrodia elata20.110
SRR5643524five period of Gastrodia elata21.590
SRR5643525five period of Gastrodia elata23.020
SRR5643528five period of Gastrodia elata24.160
SRR5643658five period of Gastrodia elata23.360
SRR5643659five period of Gastrodia elata24.480
SRR5643660five period of Gastrodia elata28.390
SRR5643661five period of Gastrodia elata23.310
SRR5643662five period of Gastrodia elata25.480
SRR5643663five period of Gastrodia elata27.170
SRR5643664five period of Gastrodia elata28.160
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_130.350
SRR6049655Rhizomagastrodiae_C368-T10_good_124.110
SRR6049656Rhizomagastrodiae_C368-T07_good_124.020
SRR6049657Rhizomagastrodiae_C368-T07_good_133.440
SRR6049658Rhizomagastrodiae_C368-T04_good_130.100
SRR6049659Rhizomagastrodiae_C368-T04_good_132.510
SRR6049660Rhizomagastrodiae_C368-T01_good_128.120
SRR6049661Rhizomagastrodiae_C368-T04_good_126.950
SRR6049662Rhizomagastrodiae_C368-T01_good_123.900
SRR6049663Rhizomagastrodiae_C368-T01_good_124.930
SRR6049664Rhizomagastrodiae_C368-T10_good_124.170
SRR6049665Rhizomagastrodiae_C368-T10_good_124.170
SRP279888GastroGastrodia elata tuber 30.24
JuvenJuvenile tuber40.85
Mother_GastroMother tuber of Gastrodia elata 32.10
Mother_JuvenMother tuber of Juvenile 47.61