Detail information of GWHGAAEX008026/evm.TU.scaffold_21.39
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428224590|ref|YP_007108687.1| | 5.00E-93 | phytoene synthase [Geitlerinema sp. PCC 7407] |
| KOG | KOG1459 | 2.00E-144 | Squalene synthetase |
| nr | gi|743851921|ref|XP_010940259.1| | 7.36E-154 | PREDICTED: phytoene synthase 2, chloroplastic-like [Elaeis guineensis] |
| Swissprot | tr|P53797|PSY_NARPS | 5.00E-153 | Phytoene synthase, chloroplastic (Precursor) |
| trEMBL | tr|H9BB26|H9BB26_NARTA | 1.00E-153 | Phytoene synthase {ECO:0000313|EMBL:AFC95815.1} |
| TAIR | AT5G17230 | 2.00E-144 | PHYTOENE SYNTHASE |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000022 | 985087 | 988196 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008026
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00494.18 | SQS_PSY | 137 | 355 | 1.20E-60 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02291 | crtB | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Carotenoid biosynthesis | map00906 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006696 | Biological Process | ergosterol biosynthetic process |
| GO:0016765 | Molecular Function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
| GO:0004310 | Molecular Function | farnesyl-diphosphate farnesyltransferase activity |
| GO:0051996 | Molecular Function | squalene synthase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.850 |
| SRR2545915 | Juvenile tuber | 5.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.480 |
| SRR5643514 | five period of Gastrodia elata | 5.150 | |
| SRR5643515 | five period of Gastrodia elata | 2.530 | |
| SRR5643524 | five period of Gastrodia elata | 4.150 | |
| SRR5643525 | five period of Gastrodia elata | 1.930 | |
| SRR5643528 | five period of Gastrodia elata | 1.200 | |
| SRR5643658 | five period of Gastrodia elata | 1.230 | |
| SRR5643659 | five period of Gastrodia elata | 3.510 | |
| SRR5643660 | five period of Gastrodia elata | 3.900 | |
| SRR5643661 | five period of Gastrodia elata | 2.680 | |
| SRR5643662 | five period of Gastrodia elata | 2.670 | |
| SRR5643663 | five period of Gastrodia elata | 4.120 | |
| SRR5643664 | five period of Gastrodia elata | 4.450 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.760 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.800 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.470 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.890 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.810 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.330 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.900 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.760 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.720 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 31.360 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 20.400 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 20.400 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.76 |
| Juven | Juvenile tuber | 5.58 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.92 | |
| Mother_Juven | Mother tuber of Juvenile | 2.82 |