Detail information of GWHGAAEX008033/evm.TU.scaffold_21.47
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743852077|ref|XP_010940303.1| | 9.78E-35 | PREDICTED: psbQ-like protein 2, chloroplastic isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q9SGH4|PQL2_ARATH | 7.00E-15 | PsbQ-like protein 2, chloroplastic (Precursor) |
| trEMBL | tr|I1IBT5|I1IBT5_BRADI | 3.00E-26 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI3G49410.1} |
| TAIR | AT3G01440 | 2.00E-14 | PsbQ-like 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000022 | 1361692 | 1363388 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008033
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05757.10 | PsbQ | 4 | 117 | 7.10E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08901 | psbQ | Photosynthesis | map00195 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0015979 | Biological Process | photosynthesis |
| GO:0005509 | Molecular Function | calcium ion binding |
| GO:0019898 | Cellular Component | extrinsic component of membrane |
| GO:0009654 | Cellular Component | photosystem II oxygen evolving complex |
| GO:0009523 | Cellular Component | photosystem II |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.130 |
| SRR2545915 | Juvenile tuber | 2.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.330 |
| SRR5643514 | five period of Gastrodia elata | 3.430 | |
| SRR5643515 | five period of Gastrodia elata | 1.850 | |
| SRR5643524 | five period of Gastrodia elata | 1.500 | |
| SRR5643525 | five period of Gastrodia elata | 19.330 | |
| SRR5643528 | five period of Gastrodia elata | 10.380 | |
| SRR5643658 | five period of Gastrodia elata | 9.590 | |
| SRR5643659 | five period of Gastrodia elata | 10.130 | |
| SRR5643660 | five period of Gastrodia elata | 9.910 | |
| SRR5643661 | five period of Gastrodia elata | 15.230 | |
| SRR5643662 | five period of Gastrodia elata | 25.180 | |
| SRR5643663 | five period of Gastrodia elata | 24.450 | |
| SRR5643664 | five period of Gastrodia elata | 33.600 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.450 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.330 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.040 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.560 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.570 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.520 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.430 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.130 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.820 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.200 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.200 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 23.92 |
| Juven | Juvenile tuber | 2.66 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.81 | |
| Mother_Juven | Mother tuber of Juvenile | 3.36 |