Gene detail

Detail information of GWHGAAEX008035/evm.TU.scaffold_21.49

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743877210\|ref\|XP_010907835.1\|	2.43E-100	PREDICTED: uncharacterized protein LOC105034391 [Elaeis guineensis]
trEMBL	tr\|B9RY47\|B9RY47_RICCO	5.00E-82	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF43739.1}
TAIR	AT1G60670	5.00E-54	Protein of unknown function (DUF3755)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000022	1366558	1400957	-

Transcript Sequence
>GWHTAAEX008035 CGAAAAGATTTAAAAGTTAGATATCTGTTGCAGGAATGCTTGATTGAACCTCTGTAACTCCACCTCACCGAAATCCGAGGAATCTGATGCTTCGAACTGTTCTTCTGGTCTGTATTCCAAATCGAGAGAGCAGAATAGACGCGCTGTGCCAGGTCCATGCGCTGACGAATTATCATCTTGCTTTCGCTCTCTCGCTCGAATAAAGAATTACAATGTGGCTTCGAGGGTTTATAACTCGACAATATTCAACATCTATATATTTTTTTATTTTCCGGTCTTTGGCTGGCTACGTAATTGGGAAAAGTTGAATTACGGCACTTTTGTCTTTTTTGTTGTCTTGGAAAAATATAAATTGGTGCTTTGGCTTCGGATAAGCGAGGTGTGAACCTTCTTTTAACGGAACGGCCGCTTTTGTCTTCGCTTGGTAGAAAGGTTTCTCGACGTTTTCAGCAGTTGCTTGTGGAGGGGAGGGATTAAATTCTGGACGCATGCGTGAAAGTTTTCTTCTTAATTTGAAGGTAAAAGGCTTCGAGAGTAGCGGAAATTAAAGGCTAGTTTAACGCAGGTGAATTTGCAGAAGAAATTGCGTTGGTGGTTTTCATGCTTCGACTGTTTACAAGATCAAGGATTTGAGAGCAACAGGCATTAGTTCCAAGCTGCAAGATGTTTTGGTGCTTCTAAGCTTTTTGTTGATTATGAGCATGGCAGCTGATTCTAATATGAACTTTCATAATGGTGTTTTTCCTTCATCCTTCTGCAATCAACATGTAGTTTCTTTCCAGTCTGGGGAAATAAATGCTACAAATGGTGTTATTCAAGGAGGAACTGGAGAGATTAGTATCTCTACTGGTACGATGCGGACTGGGAGCCCTAGCATTTTGGGCTACGCATCTGCCACGATGTTGCAAGGATCTGGAACTGGTCTGTTTTCCGAGTCCATGGCTGGGCTGAAGCATGATACGGGTTTAGCTGTAGATTGGTCCTACAAAGAACAGGCGGTCCTACATCATGGGCTCACCAAATATTCCGATCAACCAAGCATTTTGAAGTATATCAAAATTGCTGCTCTTCTTCCTGAGAAAACTGTGAGGGATGTGGCTTTGAGGTGTCGTTGGATGAATAGGAAGGAAGGTGACAAACGCCGGAAACTTGAAGAATTTTATACTGGATCAAAGTTCAAAGAGAGAAAGGAAATACTGGTGAGTTATTCCATGGAAAATATACATCGACTGGGTGATGTGGCGGCCCATCCTTGTATGATGCATCTAGCGAAAAACAACAATCATTTATTGACCGAAAGTCCTGTTATCAATGACGCTACTCGACAACTTATTGAGGAGAATACTCAGCTTCTAAACAAGATTGCAGCTAATCTAGGAAAATTCATAGCCCAAGATAATGTAAACCTCTTCTTACGCATTAGAAATAACATAACAGCTATTCTCAACAGCATGAGTAAAATGCCTGGAATAATGAGTCAAATGCCGCCATTACCAGCGGCCATGAACGAGGATCTTATTACCACCTTCCTCCCGAACACAAGTCAAGCGTTCATGTTCAAATCACCAGCTGGCAATTTTGTGAAGGAAGAGCCAAATTGCTAATGACTGATTACGGAATTGTTACTATATGACCTTCTGTAAATGTCCCACGAGCTGTCTTCGAATAGGATTCAACAAGAGGATTTTGTAAAGATCACACAAACCACAAGCATTATAAGCTGTCCTGATTTCGAAAGCTTTCAACCTGTATGTTCGGCTGCAGTTTAGAGGCGTTTTATGTTCACCTAGAGAAAGAGAGAGAAAGAGAGAGAAGAGATTGGGATGGATATGATTCTTTGATGACGTTCCCTGGCTTTTAACCTCACTTACAATAGCAGCTATATGCAATTAAGATAACTTTATTGAAAGCGCCAAAATTCCTTGCATTCTGTATTCGCAAAACAGTCAGTGTGTGAAACTCTTCTCTCTATGATATATTTATCTTTTGATTCTTTATTTCTTTGTTTTTACTTTTTGTAATCTCTTAACAAAGTTATGCAATGTCTGTTTAGTTCGGTTGCTGGTTGAATTTTTATCTCTGAGAAGATTTGGATTCTTTTCTAATCCACTTAGTTTGTCTGTG

Network for GWHGAAEX008035

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12579.7	DUF3755	232	262	3.60E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.260
SRP064423	SRR2545915	Juvenile tuber	6.620
SRP108465	SRR5643513	five period of Gastrodia elata	18.810
	SRR5643514	five period of Gastrodia elata	9.590
	SRR5643515	five period of Gastrodia elata	9.000
	SRR5643524	five period of Gastrodia elata	11.810
	SRR5643525	five period of Gastrodia elata	11.100
	SRR5643528	five period of Gastrodia elata	10.020
	SRR5643658	five period of Gastrodia elata	8.380
	SRR5643659	five period of Gastrodia elata	2.440
	SRR5643660	five period of Gastrodia elata	1.280
	SRR5643661	five period of Gastrodia elata	1.270
	SRR5643662	five period of Gastrodia elata	1.340
	SRR5643663	five period of Gastrodia elata	1.430
	SRR5643664	five period of Gastrodia elata	1.070
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.680
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.610
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.800
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.650
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.850
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.140
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.920
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.680
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.180
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	16.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	16.540
SRP279888	Gastro	Gastrodia elata tuber	3.85
	Juven	Juvenile tuber	20.71
	Mother_Gastro	Mother tuber of Gastrodia elata	7.39
	Mother_Juven	Mother tuber of Juvenile	15.54