Detail information of GWHGAAEX008038/evm.TU.scaffold_21.54


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672172688|ref|XP_008806446.1|3.53E-99PREDICTED: uncharacterized protein LOC103719132 isoform X2 [Phoenix dactylifera]
trEMBLtr|M0SR09|M0SR09_MUSAM4.00E-93Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P21960_001}
TAIRAT3G224503.00E-56Ribosomal L18p/L5e family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002214817461492298-
Transcript Sequence

Network for GWHGAAEX008038

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00861.21Ribosomal_L18p2853769.00E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02881RP-L18, MRPL18, rplR Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms14.950
SRR2545915Juvenile tuber12.270
SRP108465SRR5643513five period of Gastrodia elata12.090
SRR5643514five period of Gastrodia elata15.650
SRR5643515five period of Gastrodia elata12.370
SRR5643524five period of Gastrodia elata16.620
SRR5643525five period of Gastrodia elata16.830
SRR5643528five period of Gastrodia elata16.850
SRR5643658five period of Gastrodia elata21.250
SRR5643659five period of Gastrodia elata8.340
SRR5643660five period of Gastrodia elata4.580
SRR5643661five period of Gastrodia elata8.060
SRR5643662five period of Gastrodia elata6.750
SRR5643663five period of Gastrodia elata6.580
SRR5643664five period of Gastrodia elata5.400
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.470
SRR6049655Rhizomagastrodiae_C368-T10_good_19.360
SRR6049656Rhizomagastrodiae_C368-T07_good_114.120
SRR6049657Rhizomagastrodiae_C368-T07_good_113.270
SRR6049658Rhizomagastrodiae_C368-T04_good_19.900
SRR6049659Rhizomagastrodiae_C368-T04_good_113.480
SRR6049660Rhizomagastrodiae_C368-T01_good_113.710
SRR6049661Rhizomagastrodiae_C368-T04_good_111.750
SRR6049662Rhizomagastrodiae_C368-T01_good_114.440
SRR6049663Rhizomagastrodiae_C368-T01_good_113.670
SRR6049664Rhizomagastrodiae_C368-T10_good_118.420
SRR6049665Rhizomagastrodiae_C368-T10_good_118.420
SRP279888GastroGastrodia elata tuber 5.85
JuvenJuvenile tuber9.17
Mother_GastroMother tuber of Gastrodia elata 12.76
Mother_JuvenMother tuber of Juvenile 5.55