Detail information of GWHGAAEX008042/evm.TU.scaffold_21.58
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3108 | 2.00E-66 | Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit |
| nr | gi|695080987|ref|XP_009387985.1| | 4.31E-137 | PREDICTED: replication protein A 32 kDa subunit B-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q6H7J5|RFA2B_ORYSJ | 2.00E-95 | Replication protein A 32 kDa subunit B |
| trEMBL | tr|M0UBF8|M0UBF8_MUSAM | 2.00E-137 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP22500_001} |
| TAIR | AT2G24490 | 2.00E-66 | replicon protein A2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000022 | 1573959 | 1600669 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008042
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01336.24 | tRNA_anti-codon | 87 | 144 | 1.70E-06 |
| PF08784.10 | RPA_C | 166 | 260 | 5.70E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10739 | RFA2, RPA2 | DNA replication | map03030 |
| Nucleotide excision repair | map03420 | ||
| Mismatch repair | map03430 | ||
| Homologous recombination | map03440 | ||
| Fanconi anemia pathway | map03460 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006260 | Biological Process | DNA replication |
| GO:0006281 | Biological Process | DNA repair |
| GO:0006310 | Biological Process | DNA recombination |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.530 |
| SRR2545915 | Juvenile tuber | 14.230 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 44.690 |
| SRR5643514 | five period of Gastrodia elata | 49.960 | |
| SRR5643515 | five period of Gastrodia elata | 46.050 | |
| SRR5643524 | five period of Gastrodia elata | 46.080 | |
| SRR5643525 | five period of Gastrodia elata | 53.800 | |
| SRR5643528 | five period of Gastrodia elata | 47.680 | |
| SRR5643658 | five period of Gastrodia elata | 51.210 | |
| SRR5643659 | five period of Gastrodia elata | 42.070 | |
| SRR5643660 | five period of Gastrodia elata | 45.410 | |
| SRR5643661 | five period of Gastrodia elata | 46.740 | |
| SRR5643662 | five period of Gastrodia elata | 49.190 | |
| SRR5643663 | five period of Gastrodia elata | 43.160 | |
| SRR5643664 | five period of Gastrodia elata | 54.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 23.480 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 48.140 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 23.960 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 26.500 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.070 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.630 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.070 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.750 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 34.700 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 34.700 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 34.73 |
| Juven | Juvenile tuber | 87.44 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 51.76 | |
| Mother_Juven | Mother tuber of Juvenile | 60.75 |