Gene detail

Detail information of GWHGAAEX008044/evm.TU.scaffold_21.61

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695026951\|ref\|XP_009400794.1\|	1.65E-73	PREDICTED: protein SHI RELATED SEQUENCE 1-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9LQZ5\|SRS5_ARATH	1.00E-60	Protein SHI RELATED SEQUENCE 5
trEMBL	tr\|M0SPV9\|M0SPV9_MUSAM	2.00E-72	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P17960_001}
TAIR	AT1G75520	4.00E-60	SHI-related sequence 5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000022	1773365	1776023	-

Transcript Sequence
>GWHTAAEX008044 TAACAGCTTACTATAATAATTCAAAGAAATAATCAATATAATAATAAATTCATAAAATTAATCAAAACAAAAAGCATATGCAAGAGCATTTAACTTCACACATGATTTAGCTATTCATCCCGGCTAAGCTCGGCCAGCTTCCAGTGGGCTGAGCAGCACAGCTTCTGAACACGTGGACAAGCCGATGCGCGTTAGAACATCAACGGACGTCCACAGATCTTAGGGGAAACAGCAGAAATGGATTTTCAGCTCCCTTCCTTGATCCTTCACTACTGAGAGAGAGAGAGAGAAATGAGAGACGAAGGGTCGCAGTAAGCAATAAATGAAATTTTGCGGCAGCGAGGGCAGCAGAATCCATGGCGGCGTTGCAGTCCTTCTAATTCTGTCTCTTAAATATACTTCCCACAGGAAAAAGCGAGCGCCCAGCTCTGGAATCCAGCCAAAGTTACCCCCGCTCGCACACCGAGAGAAAGTCGGAGAGAGAAACCCACCAAAAAGCAACCACAAAATACAATAACATAATAAAAAGCAGCCTCTGTTCCACTCTGTTTTTCCCTGCTAAGCCGCCGCTTCTCAGAACCTTTAAAACCCCCAAACCCAAAATAAAGATCTCTCCTTTCCGCTTCTCGCCTCATCCATACACTGAAATAAACCATATATTTAATCAGCGAAAAGCAAAAGCCGTCCGTCCTTTATTGCTTCATTTTGATCCAGAAGAAGAGGGAAAAGGCGGGATGAATTTTTTTAAAGAGCGGAGGCGAAAATGGCGGATTTTTCTCTGAGCGCGGCTGCTGCCGGCGGCGGCCGAAGCCAGCAGCGCCGCGGCTCCCAGCAAGCCGGCGAAGAGATCCCCTCTGAAAGCTTCTTCCTTTACAGCGCCGCCGCCGGGAGAAGCTCTGAGCCGTGGCAGCCACCCCAGCGGAATCTCCTCTGTTTCGGCGGCCCACCCGATGATCCCATCGGCCCGGCCCCGGCCCGGCCCGGAGGCATCAGCTGCCAGGACTGCGGCAACCAGGCCAAAAAGGATTGCGCCCACATGCGCTGCCGCACGTGCTGCAAGAGCCGCGGCTTCGTCTGCCCCACCCACGTCAAAAGCACTTGGGTTCCCGCCGCCAAACGCCGCGAGAGACATCAACAGCTGGTCTCCGCCTCCGCACCGGCCGCCGCCGTCGTCTCCGCCCTACCTCCGCCGTCCTCCGCTGGCGAGCCTCTTAAAAGACAGCGAGATCTCGCCGCTCGCCTTCCTACCGTCATTACTGCCACGTCGTCAGAGGGTGTCCTGAGCTTTCCGGCGGAATTAAGCTCACCGGCGGTGTTCCGGTGCGTGAGAGTGGGCCCTATCGACGAGGGTGAGGGGCAGTTCGCGTACCAGACAGCTGTCAGTATCGGCGGCCATGTCTTCAAAGGCATATTGTACGACCAAGGACCGGATTATTTCCCTTCCACCACCTCCGCCGCCGCCGCCGCCTGCTTTGATAGCACGCCGGCAATCTCAACCTCGGCAACCGCCATCGCCGGTTTGCTGCCGGAGCCTTCCAGCTATTATACCAGCGCTCCTCTCAGCGCCTTCGTCGCAGGAACTCAGTTCTTTCCCCACCACTCCAGACCTTGAAGAAAGCTAACAAACAGATTATTGATGGGTAAATTAACACTTTCATTTTCCTTCCACTAAAAATCATTGATTGTCCGTCGGATAATTTCATGCAATGGCAAAAGTTTTATTTTAATTCCATTAATATCATCATAATGGAACTCGAGGAGGTGCGAAAAGAGAGGAGAAGGTCGAATTTCCCTTTTTTTAACTTGTTTCAGTTCCCGCATTCCTTGCTTCTTTTACGCCTAAATAGTTATTTAAAGTAATTATTTATCATAAATAAATAACTCTCTCACCTATGAACTGATTACTGGATGTGACCTTCTTCAGCTCCTCTCTCTTTTTGTGCTTGAAACAAGGAAGACTTTCAATGCTTGTAGGGATTATTTTAATTAAATAATTAATATTATTTATTTTGTTAAACAAAAAAGTAGATGTCGC

Network for GWHGAAEX008044

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05142.11	DUF702	75	223	1.00E-64

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SRS

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.600
SRP064423	SRR2545915	Juvenile tuber	4.440
SRP108465	SRR5643513	five period of Gastrodia elata	3.010
	SRR5643514	five period of Gastrodia elata	2.480
	SRR5643515	five period of Gastrodia elata	2.630
	SRR5643524	five period of Gastrodia elata	2.310
	SRR5643525	five period of Gastrodia elata	2.670
	SRR5643528	five period of Gastrodia elata	0.430
	SRR5643658	five period of Gastrodia elata	0.030
	SRR5643659	five period of Gastrodia elata	7.560
	SRR5643660	five period of Gastrodia elata	9.180
	SRR5643661	five period of Gastrodia elata	7.820
	SRR5643662	five period of Gastrodia elata	12.290
	SRR5643663	five period of Gastrodia elata	9.430
	SRR5643664	five period of Gastrodia elata	19.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.670
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.020
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.870
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.790
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.640
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.010
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.600
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.840
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.080
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.200
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.580
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.580
SRP279888	Gastro	Gastrodia elata tuber	10.43
	Juven	Juvenile tuber	5.34
	Mother_Gastro	Mother tuber of Gastrodia elata	26.05
	Mother_Juven	Mother tuber of Juvenile	13.36