Gene detail

Detail information of GWHGAAEX008059/evm.TU.scaffold_21.78

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672166243\|ref\|XP_008803046.1\|	0	PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Phoenix dactylifera]
Swissprot	tr\|Q8RX01\|Y3567_ARATH	8.00E-117	BTB/POZ domain-containing protein At3g05675
trEMBL	tr\|F6HU59\|F6HU59_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58282.1}
TAIR	AT4G10800	1.00E-77	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000022	2280663	2284314	+

Transcript Sequence
>GWHTAAEX008059 CTTTTCAAAAAATTTTGAATTTCACAATGAATTTTCATGACATTTTAATAAAAATTAAAAGTTGAACTTGAGGAAGATAGGTAAATACAAAAGATTTTCATATGATACTCACATAATCAAAACAAATATCATTGAAGCACAAGATTTCAATACGAGTCTCTTGCCAAAAAAGGCTTAAAATAGACTAAGAAAAATAGCTAAAACCTTGGTAGAGATAGATCCTTATCTCACAAATCCATTAATCAAGCAAAGGAGATTTAAGAGATGCTAGAAACAAACCCAATGATTAGATCTCTATAAGACCATTCATCATGAATTGATTTAAAAATTGAGGATGAGAGGAGTAAAGAGTAAGGTGAAGAGTGGGTTGGAGGAGTTTCAGGGTTAGAGGAGATAGCCTAAATGAGGGTGTGGCTGTCATCTCCTCCCTGTATAAACTCTTGGGACACATGTCACTGTCCAAGGTACTATATTTAATCACTGTGCCACCTATCAAAATTTTAGCTCAACAGGACCTTTGGAAGATGTTTTGAGTGGTGTCAGAGCTTGCTCTTTGGTTTGCAATCGCTTAGCTAACTCCCCAACGTTGCTAAGTGGACCTCCCTATATAGTCATCAAAGTGCAGTCATATATAAGTACATGCCATAACCTCACTCAAATCACAACGTCATATAAAATATAAAGGAATAGCACATTCAAATGAATAACCTTTCACATAATGTCTTTTTTGAAATACAGTTTTTGAAATTGAGTTTGAACATATTATTTAAGGCATTGTTTGTGTGTAAAATTTTCATATATACATACAACAAAGTTTGAAGTTCTTGATAAATTAATATAGTAAATAAGATACAGATGAGTGATATTTTAATAAATGCACATGTATTATTGGATTGATCATCATAAATGTAACAGCATAATGAAAATTTAAAGGAGTCAAAATAGGACTAGGAGCCTACTAAAACAGGCAGTAACAACGTTTAATAAAAAGGGCTAAAAGGTGGCTCAACGATGTTCTTTAGTTAACAAGCTAAGTAGTCAAATTTAGATGGAATGGAAATGGAATATGGAATACAGAAGGATGACCCCCCAAATTACTGTTCCATTGATACTAAATAACTATGGATGCCAGAGTAGATAATGTGTTGTTCCTTAAATAGTATATTCTTATTCACTATCCATATTAATTGTCTTCTTTGTTCTACGAGATCAATAAGAAGGCTGATTGATTAAAAACTTATGAAATTGATTTATGATTTCAGTTGGACATCAAGACTGCAAAAGAGTCTATTTTTGTACAATTGAAGTTGAGAAAATGACAATAGCTGATAGAGTGGAGATGATCTAGTTAAAAAGCTTAATGGAGTTGTGCAATGAACAAACAAGCAATATCTTTTTAGTGACAACTAGAGCTTCGTGCATCTTGAGAAAATTCATTTTTTTAGTTAAGGACTAATCACATATGCTTGGAAAATGTCACATTTGCGGACCAATTGATGATGGAATACGGCAGATTATTAGCACTAAAAATCATATTGGTATGCTAACAAAGGTTATCAATATCTTGAGCTTGAGGTTATGTATAACCTCAGTTACTTTCTAGAGTATTTGATGCTTGGACGAATTGCATTAGAGAGAATGAACATGATCTACATGCTATAGGAAAAGAAAGAGGACGAACATTGCTTGGAAGAACTGCTTTTGAGGATTTAGTAGATGTCTATTCTGCTTTAGTGTGCCTTGGAGGATCTATTTTTTTTTTTCTGTCTTGGATGGGATTTTGTGGGGAGTTTTATGGTTGTATTCCTAGTGTTATTAGAATAGATGTAAAGGATTGTTAACCTAAAGTTTTGCCATGCTCATCTTCTCTCGAAGGGCATGGTTTTTTCTTGTTTTTTAATTTTCTACTACTTTCTTTGAGATGATGCGCAAGAATTTTTATTGTGACTTGTGGCTTGGGCGAATCATCACTAAACCATGTAATTTGTGTACTTGTGCTTGCACCTTTTTCTTGTTTGTTGGCTATTATCCCATTTGACCTTTACGGGGATAAAGGTACCCTAGAAGTTGCATGAATAGAAAAAACTAGTTGCGAACCTCGCAAAGCTTATTTAAATAATTTGGTAAGATCAATCATCAATCTAATATTGTGGATCGTATTTGAAGATAAAAAGTTTTTACTGTTATAGCTCGCACAAACTATCAAACGATTTCATAATCTAAGATTGGAGACAATCCAAATTACCACTTCATCTCTATGTAAACTATCCCGCATTCCTAAATGTACTTTTGATTTTTAATTGTTATGCAAGATGTTAGAACTCTTCATATGGAGGAAACCAGCATAGCTCCCGCATATATTTTTGGTGATCAGAACACAAGCGACGTTACGGTTCTTCTTAAGAACTGGGGAGATAGATTGGAATTCTTTTATTGTCACTCTGCTATTTTGGTAAAAAAAAGCAAGTTCTTTGAAGAACAGCTTTCTAGGGAACATCCTACATGTACTCTAAATGATTCTACAATTTGCATTCAGATTTCTTGCCATGGGTCTCAATATGACCACTATGCCAAGCTTCTGAAGCTCTTGTATGTTTCTGACCATTCAGTTCTGGATTCATATGATTCTGTGAGGACTGCTCTTGGAGTTCTCCAAGCTTCTGCTGCTCTTCACTGCAGCTCCATCACTGAGAGCTGCATGCAGTACCTGGAAGCCGTCCCATGGGACGAAAAGGAGGAGGAAGAGATACTGAAGATCATTCCAACTCTTGGTCCAGAAGCTGCATACATCCTTGCCCGCATCCAGCCTGTCGATCTGAACGCTACAAAGAACATTTTCATCTCTGCCATTCGCTTCGCAACTGCTATCGAGCGACCTCTTCCTCCTTTTGCCGATGAACTTAAAACTTCAGCACAGGAGCAACTGGAATACATGCTGCTAGAAGATGAGGACACTCCTTCTGTAACAGTGGATGAGGATGTCATGTCTGAAGTGAGGGCTGGCCTAAGCAACATGCTTGCAAACTTTGAGAATGAGCTGAGCATACTTTCGCAGGACCACAAACTCTCACCAGAGGCATCAGAGCAGAGACTGGTGCAAAGCCTCTCAGACTTGGAGTGGATGTGTGGAATTCTTTTGAAGATGGAGATGATGAAGGATTTTGTCACCGGCTGGGCTGAAATCTCTAGTAAAGTGCTGGTTGTAATCCAAGATGAGAAGTTTGATTTGGGTCTCTGGGCAGTCAAGGTTAAAGTGATTGAGTTGGTTGGTAAGGCCCTTGATGCAATTGGGTATGGAAGTGTGGTGCTTCCAGCTCCATTCAGGGTTCAGTTCCTCGCAACTTGGCTTCCCTATTTGAGAAAAATGAAGCCTTTATTAGATTTGAAGAGCGATAGCGACGGGTCCTTTATGTATAAGTTGGATAGTGAACTGTGCCAAAATTTAGAGGGGGCAATAGTTTCTGTAATACTTGCACTGCCATCTAATGATCAGGCTGATATACTCGGAGACTGGATACAGAGGACCGAGCAGCTGAAGTTCCCTGATCTGAGTGAGGCGTTTGAGCTATGGTGTTATCGTGCCAAAACTGCCAAGAGAAGACTAAGCTTGGGCTTGAATGGAGTGGGAAACCCCACAGTGAGTCTCCTATGA

Network for GWHGAAEX008059

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00651.30	BTB	24	136	3.50E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TRAF
Ubiquitin Family	BTB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.730
SRP064423	SRR2545915	Juvenile tuber	6.300
SRP108465	SRR5643513	five period of Gastrodia elata	5.550
	SRR5643514	five period of Gastrodia elata	4.940
	SRR5643515	five period of Gastrodia elata	5.050
	SRR5643524	five period of Gastrodia elata	4.860
	SRR5643525	five period of Gastrodia elata	3.060
	SRR5643528	five period of Gastrodia elata	3.580
	SRR5643658	five period of Gastrodia elata	3.840
	SRR5643659	five period of Gastrodia elata	5.590
	SRR5643660	five period of Gastrodia elata	6.290
	SRR5643661	five period of Gastrodia elata	5.900
	SRR5643662	five period of Gastrodia elata	6.120
	SRR5643663	five period of Gastrodia elata	5.460
	SRR5643664	five period of Gastrodia elata	6.350
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.240
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.600
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.700
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.930
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.260
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.660
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.240
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.580
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.000
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.530
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.530
SRP279888	Gastro	Gastrodia elata tuber	4.91
	Juven	Juvenile tuber	5.43
	Mother_Gastro	Mother tuber of Gastrodia elata	4.57
	Mother_Juven	Mother tuber of Juvenile	3.08