Detail information of GWHGAAEX008061/evm.TU.scaffold_21.81
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|289596018|ref|YP_003482714.1| | 8.00E-17 | protein of unknown function DUF82 [Aciduliprofundum boonei T469] |
| KOG | KOG2207 | 0 | Predicted 3'-5' exonuclease |
| nr | gi|672133763|ref|XP_008790516.1| | 0 | PREDICTED: uncharacterized protein LOC103707705 isoform X1 [Phoenix dactylifera] |
| trEMBL | tr|M0T028|M0T028_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P19990_001} |
| TAIR | AT5G24340 | 0 | 3'-5' exonuclease domain-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000022 | 2292453 | 2327998 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008061
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01612.19 | DNA_pol_A_exo1 | 21 | 219 | 4.30E-19 |
| PF01927.15 | Mut7-C | 367 | 522 | 1.30E-37 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006139 | Biological Process | nucleobase-containing compound metabolic process |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0008408 | Molecular Function | 3'-5' exonuclease activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.770 |
| SRR2545915 | Juvenile tuber | 5.670 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.980 |
| SRR5643514 | five period of Gastrodia elata | 3.830 | |
| SRR5643515 | five period of Gastrodia elata | 4.560 | |
| SRR5643524 | five period of Gastrodia elata | 4.270 | |
| SRR5643525 | five period of Gastrodia elata | 3.050 | |
| SRR5643528 | five period of Gastrodia elata | 2.120 | |
| SRR5643658 | five period of Gastrodia elata | 1.730 | |
| SRR5643659 | five period of Gastrodia elata | 4.000 | |
| SRR5643660 | five period of Gastrodia elata | 4.670 | |
| SRR5643661 | five period of Gastrodia elata | 4.400 | |
| SRR5643662 | five period of Gastrodia elata | 2.730 | |
| SRR5643663 | five period of Gastrodia elata | 3.870 | |
| SRR5643664 | five period of Gastrodia elata | 2.270 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.240 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.370 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.710 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.030 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.940 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.740 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.020 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.480 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.480 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.020 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.850 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.850 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.44 |
| Juven | Juvenile tuber | 5.12 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.36 | |
| Mother_Juven | Mother tuber of Juvenile | 4.18 |