Detail information of GWHGAAEX008062/evm.TU.scaffold_21.84
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428310074|ref|YP_007121051.1| | 2.00E-24 | WD40 repeat-containing protein [Microcoleus sp. PCC 7113] |
| KOG | KOG0283 | 2.00E-166 | WD40 repeat-containing protein |
| nr | gi|743828371|ref|XP_010933843.1| | 0 | PREDICTED: WD repeat-containing protein 44 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|P93397|GBB1_TOBAC | 3.00E-11 | Guanine nucleotide-binding protein subunit beta-1 |
| trEMBL | tr|M0SYP3|M0SYP3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P15140_001} |
| TAIR | AT5G24320 | 2.00E-166 | Transducin/WD40 repeat-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000022 | 2456825 | 2461073 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008062
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 210 | 244 | 5.70E-07 |
| PF00400.31 | WD40 | 311 | 347 | 5.10E-08 |
| PF00400.31 | WD40 | 356 | 388 | 0.12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.070 |
| SRR2545915 | Juvenile tuber | 11.230 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.610 |
| SRR5643514 | five period of Gastrodia elata | 13.030 | |
| SRR5643515 | five period of Gastrodia elata | 11.690 | |
| SRR5643524 | five period of Gastrodia elata | 13.780 | |
| SRR5643525 | five period of Gastrodia elata | 8.490 | |
| SRR5643528 | five period of Gastrodia elata | 6.390 | |
| SRR5643658 | five period of Gastrodia elata | 6.430 | |
| SRR5643659 | five period of Gastrodia elata | 11.090 | |
| SRR5643660 | five period of Gastrodia elata | 7.080 | |
| SRR5643661 | five period of Gastrodia elata | 11.330 | |
| SRR5643662 | five period of Gastrodia elata | 8.900 | |
| SRR5643663 | five period of Gastrodia elata | 9.440 | |
| SRR5643664 | five period of Gastrodia elata | 7.510 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.930 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.680 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.480 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.160 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.760 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.430 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.470 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.190 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.960 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.960 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.82 |
| Juven | Juvenile tuber | 3.66 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.88 | |
| Mother_Juven | Mother tuber of Juvenile | 1.49 |