Gene detail

Detail information of GWHGAAEX008072/evm.TU.scaffold_21.95

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1931	Putative transmembrane protein
nr	gi\|672174453\|ref\|XP_008807382.1\|	PREDICTED: uncharacterized protein LOC103719770 [Phoenix dactylifera]
Swissprot	tr\|Q2QNU0\|TR130_ORYSJ	Trafficking protein particle complex II-specific subunit 130 homolog {ECO:0000305}
trEMBL	tr\|M0S4G0\|M0S4G0_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P02190_001}
TAIR	AT5G54440	CLUB

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000022	2717318	2762955	+

Transcript Sequence
>GWHTAAEX008072 CTTTATTCGTCAGACCCTTGGCATTGTATGATGAAAAAGGCTTGTCGCGTTTTGGCTCTTGAAGCTTGACTCCGATCTTCCCGACAACGGTCGCAACCGCCGGCTATTTATCCCGCATGTGACTATTCGGATCCGCCATGGCCAACTACTTGGCTCAGTTCCAGACCATTAAGAGCTCCTGTGATCGCTTGATCATATCTGTCGAAGATGTAAGTGATCTGTGGCTCAGTGTAAAGGAGGGATTTGAAGAGCGCTTGCCTTTTAAGAAGGCTCTTCTCAGTAACAAAACTCGAAATGCTGTCTATGTGGAGAATTTATCTGCAGAATTTATATTAACTACTGATGCTAGGTTACGCAGTCGTTTTTCGCAAGAACTGTCTGTTTTTTGGTTTAGGGAACCATATGCAACTGTTATTCTTGTTACTTGTGAGGATCTTGATGAATTTAAGACAATTCTAAAGCCACGATTAAAATTAATTGTCCAAAATGATGAGCGAGAGTGGTTTATTGTATTTGTGTCAAAAGCTCACCCGAGCAATGATCAAGCAATTAAGACGGCTAAAAAGATATATGCTAGACTTGAGGTTGATTTTAACTCAAAAAAAAGGGAGAGGTGTTGTAAATTGGATTTGCAAGGCCCTGATGCAAACTTTTGGGAAGATTTGGATTCTAAAATAGTTGAATCAATCAGAAATACATTAGATCGTCGCATTCAATTTTATGAGGAGGAAATCCGCAAGCTCACTGAACAACGTTTCATGCCTGTCTGGAGCTTCTGTAACTTCTTTATTTTAAAGGAAAGCCTGGCGTTCATGTTTGGGATGGCTCATCTTTATGAAGATGCCTTGCTTGAATTTGATGAACTAGAACTTTGCTATTTAGAAACAGTACATACATCAAAGCAGAAAGATTTTGGTGGTTTAGAGCGAGGAGACGACCAAGCTGCTCTGCTAAATACTAAATCTAAGCCATTAACTCAAGTTGTTCAAGATGGCTCATTTAGAGAATTTGAATTTAGACAATATCTTTTTGCATGTCAATCAAAGCTATTATTCAATTTATTTCGTCCTGTCGAGGTTGCTTTGAGGGGCTACTCATTCATAATCAGCTTTTCAAAGACTCTAGCTTTATATGAAAATTTGTTGCCATTTTGCTTCCGAGAAGTATGGGTGATAACTGCTTGTTTAGCCATTATCAATTCAACTTCTTCACTTTTTGACAGTTCAAATGCAGCAGCAGATGTAGGGAAGAAGTTCTTTCGTCTCCGGGGTGACCTCTATTCACTTTGCCGGGTGAAATTTATGAGGCTGGCTTATTTGGTTGGTTATGGATCTGAGATGGAGAGAAGTCCAGCTAACAGTGCATCTTTAAGTATGCTTCCATGGCCCAAGCCAGCAGCATGGCCCCGTGTCCCTCCTGTTGCCTCAGATAATGTACTTGAAAAGGAGAAGATGATTCTTCAATCAAGGTCCCGGCTGAAGCACCTCAATGTTGAGAGAAACCCATTACCCTTGGAACCTTCTTTACTGCTAAGAGAAGCTAATCGCAGGAGAGCTTCTTTTTCTGTGGGTAATACACCTGAATTATTTGATGGCCACTGGGGTCCTGCTGATGGTTCAGGTCTGGATGGACATATACAGTTCTCTCCAACTGGCAAAGTTCCGGCAAATATTATGTCACGAACTAACTCTGGTCCAGGAAACTCTGTGAGTCCATCTGTATCATTTGACCGTCCGATGAGACTGCCAGAAATCCATGTTGCAGCTGAACACGCTTTGAAGCGCACAATTTCTGATATGGATTTCTTGAAATCACTATCTTCATTGCCAGATTTTGAGAAGAGGTACATGGAACTGACAAAAGGTGCTGCTGAAAATTACCACCAATCATGGTGGAAAAGGCATGGAGTAGTTCTTGATGGAGAGATTGGTGCTTTTTGCTTCAAGCATGGAAATTATGATCTTGCTTCAAAGTCATATGAAAAAGTCTGTGCTCTTTATGCTGGAGAGGGATGGCAAGACTTGTTGGCCGAGGTTCTTCCTAATTTAGCAGAGTGCCAAAAAATCCTAAATGATCAGGCTGGCTACCTGTCATCATGCATTCGGTTACTATCACTGGATAATGGCTTATTTTCAATAAAGGAAAGGCAAGCTTTTCAGGCAGAGGTTGTTCGGCTAGCTCATGGTGAGATGAAGCATCCAGTGCCACTAGATGTGTCTTCACTGATCACATTTTCTGGAAATCCAGGTCCACCACTTGAGCTGTGTGACGGTGACCCTGGCACATTGCCAGTAACAGTTTGGAGTGGGTTTCCTGATGATATTAATCTTGAGTCTCTTAGCTTGACATTAATGAACACATTAAGTACAGATGAAAGGGTAAAGGATATAAAAAAGGCAGATGCACCTATTTTAAAACCTGGAAGAAACCTTATTATGCTCGAATTACCACCACAAAAGCCAGGTTCATATGTACTAGGTGTTTTAACGGGGCAAATTGGCCAATTGAGATTTAGATCTCATAGTTTTTCCAAGGGTGGCCCCCCTGATAGTGATGATTTCATGAGTTATGAGAAACCAACTAAACCAGTATTGAAGGTGTACAAACCAAGACCTTTGGTTGATATTACTGCATCTGCGTCATCCGCTTTGCTAATAAATGAAGTTCAATGGGTTGGATTAAATGTTACTCCAATGAACTACTCCCTTAAAGGTGCTCTCTTGTATATAGACGCTGGTCCTGGTTTGATGATTGAGGAATATCAAATGATTGAGATGGAACAGTATAGAAAAGCAACAGATCGCTGCAAAAAAGAAGATTACTCTAGTGAAGTATGTGAAAAGCTGCTTTTAGAAAATGGTAAACTAGTTTTCCCAGACTGGGCTACTGATATAGCCACTGTCTTGTGGCTCCCTGTTCGCGCTATTGACAACATGCTGGCTCGTGGAGCATCTTCTGTTAACCCTTCACGGAACAGTGTTGTAGATGGAATGAGGATGATTGCTTTGAAGCTACAATTTGGACTTCTTCACAATCAAATATTTGAAAGGACTGTTGCTGTTCATTTTACTGAGCCATTGCATGTTCGCACACATGTTGTGGACAGATGTAATGATGGTACATTACTTTTACAGGTGATGCTTTATTCTGAAGTGAAGGCTTCTCTGAAACTGTGTGATGCTTGGTTAGATCTTCAGCCAGGATTTGATCATGTGGGGCAAGGGAATGGGAGACCTGCTTCATGCTTCTTTCCTGCTGTACTCTCTCCGTCCTCTAGAGCTGCTATCTTATTTGTCATACGTATTGGAAATATTTGTTGCACAGATGAAACTGAGGCTGTGGAAACAGACAGTATCTTAAATATTGAATACGCGATTGAGGGAGACAGAACCATCGGCGCACATATGCCTGTGAATGTAAAGCCTGAAGGAAAAGGCACGCTGCTGTGTAAGGTCGAATTTCCTTTACAGCAGCCGGTACTTGATCCTTATATCGCAGTTGGATTTCTTTCTTTTGCTTCTGATTGCATGAGAGTAGGACAGCTAGTTGATATGAAATGGAGACTTGAAAGGTTGAAAGATCCAGAGAAAATTCCATCATCGTTCTCCAAAGATGAGATACTCTATGAAGTGGATGCTAACTCTGAAAACTGGATGATTGCTGGGAGGAAGAGGGGATATGTATCTCTTGGTGCAACTCCAGGTTCGAGGGTAGTCATTGCAGTGAGGTTCTTGCCTCTAGTCTCTGGCTATGTTCGTCCTCCTCAGCTTGGACTTCCTGACGTGGCCGAATCCTACATAAGCTGCAACCCTGCTGGGCCTCATCTAGTCTGTGTACTGCCTCCAACATTGAGTTCATCCTTTTGTGTGCCAACTTGATGCCATGCTTTTTGCCAGAGATGGGATTCTTCTAGAGGCTTATTCTTTGAGAGGTTAGTTACTTCTCGCTGCATTAATTGTTGATATTGCTGTGTTTGGTCTTGCGGTCTTTCTAAAATTTTAAAAAATAGCCGTTATTAAGGTAAAGAAGCTATAAAACTCTAGTTGCTGAATGTCAGGCGAATGGGGAAATAGAGAAAATGTCAATCTTGCTTTTTTTTTTCTTGGGAATATTTTGTTTTGCTGTATCGAATAAAAAATTCTAGGAGGTACAAATGTTGTATCAATATGGATATGTAAGAATGTTATTCAGGAGTAGGAGTTAGTACATCTGAGCTTGCAAACATTTTTATTTTTATTGTGGTTATTATTATTATTATTTAAGAAGTTTCATAGTGTAACATTATGAAATCTGAAAGCTACATTTTAGTACATCATTCTTTACTGCTGAACTTATTAGAACCTACTGTGATTATGAACAAGTGTTCGGGATAAGTAACAACAGTTGTGTAATTGCTAATAAATAATCTCTGTGGTTGGGTTCTATGAATGTGGGGTTGTGCCTTTTAAACATATTGCATTACTAAGTGATATTACTTTCAGTAGAACAATTGTTGTTTGTCATGTTGCGTTTTTATCCGTATGGAATTTAATCTATATTTTATACTTTGATATTACAACACGAGGGAAGAAATTAATACCTATCATTGA

Network for GWHGAAEX008072

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12584.7	TRAPPC10	1130	1210	1.00E-07

Protein Sequence

>GWHPAAEX008072
MANYLAQFQTIKSSCDRLIISVEDVSDLWLSVKEGFEERLPFKKALLSNKTRNAVYVENLSAEFILTTDARLRSRFSQELSVFWFREPYATVILVTCEDLDEFKTILKPRLKLIVQNDEREWFIVFVSKAHPSNDQAIKTAKKIYARLEVDFNSKKRERCCKLDLQGPDANFWEDLDSKIVESIRNTLDRRIQFYEEEIRKLTEQRFMPVWSFCNFFILKESLAFMFGMAHLYEDALLEFDELELCYLETVHTSKQKDFGGLERGDDQAALLNTKSKPLTQVVQDGSFREFEFRQYLFACQSKLLFNLFRPVEVALRGYSFIISFSKTLALYENLLPFCFREVWVITACLAIINSTSSLFDSSNAAADVGKKFFRLRGDLYSLCRVKFMRLAYLVGYGSEMERSPANSASLSMLPWPKPAAWPRVPPVASDNVLEKEKMILQSRSRLKHLNVERNPLPLEPSLLLREANRRRASFSVGNTPELFDGHWGPADGSGLDGHIQFSPTGKVPANIMSRTNSGPGNSVSPSVSFDRPMRLPEIHVAAEHALKRTISDMDFLKSLSSLPDFEKRYMELTKGAAENYHQSWWKRHGVVLDGEIGAFCFKHGNYDLASKSYEKVCALYAGEGWQDLLAEVLPNLAECQKILNDQAGYLSSCIRLLSLDNGLFSIKERQAFQAEVVRLAHGEMKHPVPLDVSSLITFSGNPGPPLELCDGDPGTLPVTVWSGFPDDINLESLSLTLMNTLSTDERVKDIKKADAPILKPGRNLIMLELPPQKPGSYVLGVLTGQIGQLRFRSHSFSKGGPPDSDDFMSYEKPTKPVLKVYKPRPLVDITASASSALLINEVQWVGLNVTPMNYSLKGALLYIDAGPGLMIEEYQMIEMEQYRKATDRCKKEDYSSEVCEKLLLENGKLVFPDWATDIATVLWLPVRAIDNMLARGASSVNPSRNSVVDGMRMIALKLQFGLLHNQIFERTVAVHFTEPLHVRTHVVDRCNDGTLLLQVMLYSEVKASLKLCDAWLDLQPGFDHVGQGNGRPASCFFPAVLSPSSRAAILFVIRIGNICCTDETEAVETDSILNIEYAIEGDRTIGAHMPVNVKPEGKGTLLCKVEFPLQQPVLDPYIAVGFLSFASDCMRVGQLVDMKWRLERLKDPEKIPSSFSKDEILYEVDANSENWMIAGRKRGYVSLGATPGSRVVIAVRFLPLVSGYVRPPQLGLPDVAESYISCNPAGPHLVCVLPPTLSSSFCVPT

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.770
SRP064423	SRR2545915	Juvenile tuber	23.800
SRP108465	SRR5643513	five period of Gastrodia elata	22.430
	SRR5643514	five period of Gastrodia elata	21.020
	SRR5643515	five period of Gastrodia elata	21.610
	SRR5643524	five period of Gastrodia elata	22.140
	SRR5643525	five period of Gastrodia elata	28.250
	SRR5643528	five period of Gastrodia elata	30.390
	SRR5643658	five period of Gastrodia elata	25.220
	SRR5643659	five period of Gastrodia elata	20.330
	SRR5643660	five period of Gastrodia elata	21.010
	SRR5643661	five period of Gastrodia elata	18.520
	SRR5643662	five period of Gastrodia elata	17.290
	SRR5643663	five period of Gastrodia elata	18.790
	SRR5643664	five period of Gastrodia elata	16.990
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	23.460
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.320
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	23.050
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	24.480
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	30.420
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	33.670
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	27.380
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	29.590
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.670
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.670
SRP279888	Gastro	Gastrodia elata tuber	19.59
	Juven	Juvenile tuber	29.53
	Mother_Gastro	Mother tuber of Gastrodia elata	37.31
	Mother_Juven	Mother tuber of Juvenile	49.33