Detail information of GWHGAAEX008074/evm.TU.scaffold_21.97
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|84489671|ref|YP_447903.1| | 4.00E-42 | 30S ribosomal protein S13P [Methanosphaera stadtmanae DSM 3091] |
| KOG | KOG3311 | 2.00E-103 | Ribosomal protein S18 |
| nr | gi|743824336|ref|XP_010932756.1| | 2.21E-105 | PREDICTED: 40S ribosomal protein S18 [Elaeis guineensis] |
| Swissprot | tr|P34788|RS18_ARATH | 6.00E-104 | 40S ribosomal protein S18 |
| trEMBL | tr|M5VLC1|M5VLC1_PRUPE | 2.00E-104 | Uncharacterized protein {ECO:0000313|EMBL:EMJ01671.1} |
| TAIR | AT4G09800 | 2.00E-103 | S18 ribosomal protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000022 | 2855394 | 2861184 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008074
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00416.21 | Ribosomal_S13 | 14 | 142 | 1.30E-56 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02964 | RP-S18e, RPS18 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 119.400 |
| SRR2545915 | Juvenile tuber | 149.740 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 267.570 |
| SRR5643514 | five period of Gastrodia elata | 278.640 | |
| SRR5643515 | five period of Gastrodia elata | 274.330 | |
| SRR5643524 | five period of Gastrodia elata | 256.660 | |
| SRR5643525 | five period of Gastrodia elata | 196.990 | |
| SRR5643528 | five period of Gastrodia elata | 207.220 | |
| SRR5643658 | five period of Gastrodia elata | 165.110 | |
| SRR5643659 | five period of Gastrodia elata | 245.710 | |
| SRR5643660 | five period of Gastrodia elata | 254.790 | |
| SRR5643661 | five period of Gastrodia elata | 292.970 | |
| SRR5643662 | five period of Gastrodia elata | 251.420 | |
| SRR5643663 | five period of Gastrodia elata | 262.850 | |
| SRR5643664 | five period of Gastrodia elata | 249.510 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 260.160 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 297.730 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 305.810 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 230.350 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 267.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 227.490 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 283.460 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 259.940 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 322.730 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 329.640 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 367.090 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 367.090 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 304.86 |
| Juven | Juvenile tuber | 246.65 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 143.59 | |
| Mother_Juven | Mother tuber of Juvenile | 145.88 |