Detail information of GWHGAAEX008075/evm.TU.scaffold_21.98
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3262 | 4.00E-60 | H/ACA small nucleolar RNP component GAR1 |
| nr | gi|747057483|ref|XP_011075043.1| | 2.16E-64 | PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Sesamum indicum] |
| Swissprot | tr|Q8VZT0|NLAL1_ARATH | 2.00E-61 | Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 |
| trEMBL | tr|K4D296|K4D296_SOLLC | 1.00E-64 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc10g078540.1.1} |
| TAIR | AT3G03920 | 4.00E-60 | H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000022 | 2861613 | 2869004 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008075
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04410.13 | Gar1 | 30 | 131 | 3.90E-36 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11128 | GAR1, NOLA1 | Ribosome biogenesis in eukaryotes | map03008 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0001522 | Biological Process | pseudouridine synthesis |
| GO:0042254 | Biological Process | ribosome biogenesis |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 32.050 |
| SRR2545915 | Juvenile tuber | 28.930 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 50.400 |
| SRR5643514 | five period of Gastrodia elata | 56.860 | |
| SRR5643515 | five period of Gastrodia elata | 50.990 | |
| SRR5643524 | five period of Gastrodia elata | 56.120 | |
| SRR5643525 | five period of Gastrodia elata | 35.500 | |
| SRR5643528 | five period of Gastrodia elata | 38.360 | |
| SRR5643658 | five period of Gastrodia elata | 28.900 | |
| SRR5643659 | five period of Gastrodia elata | 61.780 | |
| SRR5643660 | five period of Gastrodia elata | 57.550 | |
| SRR5643661 | five period of Gastrodia elata | 64.040 | |
| SRR5643662 | five period of Gastrodia elata | 46.120 | |
| SRR5643663 | five period of Gastrodia elata | 41.610 | |
| SRR5643664 | five period of Gastrodia elata | 41.040 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 32.960 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 43.490 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 40.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 33.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 32.910 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 31.690 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 36.890 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 32.570 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 49.500 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 49.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 43.600 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 43.600 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 43.74 |
| Juven | Juvenile tuber | 40.05 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.79 | |
| Mother_Juven | Mother tuber of Juvenile | 14.77 |