Gene detail

Detail information of GWHGAAEX008080/evm.TU.scaffold_21.104

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|217979873\|ref\|YP_002364020.1\|	5.00E-65	short-chain dehydrogenase/reductase SDR [Methylocella silvestris BL2]
KOG	KOG0725	8.00E-95	Reductases with broad range of substrate specificities
nr	gi\|226499146\|ref\|NP_001144255.1\|	1.05E-120	uncharacterized protein LOC100277126 [Zea mays]
Swissprot	tr\|Q08632\|SDR1_PICAB	2.00E-85	Short-chain type dehydrogenase/reductase
trEMBL	tr\|B6TPJ3\|B6TPJ3_MAIZE	4.00E-121	Putative uncharacterized protein {ECO:0000313\|EMBL:ACG39026.1}
TAIR	AT4G13180	8.00E-95	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000022	2918849	2926346	+

Transcript Sequence
>GWHTAAEX008080 AATAAATTGAAAGCATTGCACTGTGATAGTTCAACAAACGCGTATACACCGCACTACCACCCCACTTTTGTAAGTGTGCTTCAAACTGATAAAACTCTTGCTTGTCTCTCCTTTCCTTTCGAAGTCGAAGCCTCTAGCTTCTCATTCTCGAGACGATCCCTAATTTTTTGATTTACCCCCATCCAATCGTGCTGTTGCTGCATCTCCTCCTATGGTGATGAACGGCGTTTCTGTTGTGTATGTATTCCCCAGCGCTCCTCCAATCACTGTCCATGTCGCATTCTTCATCGGCTCCTGTTCATCATTCGAGATACCAAAAGAGAGAGAGGTATGGATGCAGTTTCAGTGTCACTAAACTCCATCGCAGAGCAAATGGCAATCGCAGCCTCACCCGTCGGCGGTCCCAAAGAGAACGGCTGCCCGCAGATCAGTGTTAGTTCATTGCCTCAGAAGGCATCTGCCCACCCTCAAAGCAGCGTCATCGCACTGCCTTTGAGCGACCGGGTGGCCATCGACGGTGACGAGAGCTTGGCAATCCAATGCAACGGCGATTACAAAGAGAACGCTGATGAGCCCTTCGATCCGCAAATTGGCATCAGCGCAATGCCCCTGAGGGAGCCCGGCAGCCCTCAAAACAACTGTGGCGCCCTGCCTCTGAGGGACCGGGTGGCCATCGTAACGGGCGGGTCGGGCGGGATCGGGTCGGAGATCTGCGCCCACCTGGCCGCGCTGGGCGCGCGGGTGGTGGTGGGCTACCTCGGCGACCCTGCTCCAGCGGACGCGGTCCTGCGGTTGATCCACGAGGCCCGGACGGGGCTACGAGGCCCGCGGGCCGTGAAGGTGGAGGCGGACGTGTCGGACGAGCTGCAGGTGGCGGCGCTGTTTGAGAGGTCGGAGCAGGCGTTCGGCGCGAGCATTAACATAGTGGTGATGGCGGCGGGGGTGCAGGACCCAGCGTACCCGAGCATCGCGGACGCGTCCTTGGAGCAGTGGGAGAGGATGTTCAGCGCGAACACGAAGGGGACGTTCCTCTGCTGCCGGGAGGCGGCGAGGAGGGTGGCGCGCGGCGGCAGCGGGAGGATAATAACGATGTCATCATCAACGGTGGGGTCGCTGAGGGAGGGGTACGGCGTGTACACGTCCACTAAGGCGGCGATCGAGGTGATGACGAGGGTCATGGCCAAGGAGCTGAGGGGAACTGGGATCACCGCCAACGCAGTGGCGCCAGGCCCCATCGCCACGCCCATGTTCTACGCCGGGAAGACGGAGGAGAGGGTCGCCGCCTCCACCAAGGATTGCCCCATGGGGAGGCTCGGTCGGCCCACCGATGTCGCCCCCGTCGTCGGCTTTCTCGCCACCGACGCTGCCGAGTGGCTCAACGGCCAGGTCATACGTATCAACGGAGGATATGTTTGAAGTCTATAATTCGATCGCCGGAAAAATAAACTTTATTGTTTTTTGTTCGAAGGAGGCTGGCTGGTTCATGGGTGGAATTTTTGATATGCTGCTACAATATCATTCACTTTCAAAGGAATGATCAAATAACATATTATTCTTCAACGGCCAAGTTATAATCCTTAACAGCTAGTGGAGAGCTTGATGATCAAATAACATTGTATTCTCCATTTTCAATCCCCAAGCACCACAATAATATAAACAGCACGTCTAACTAGAACTAGACAGGATCTCCC

Network for GWHGAAEX008080

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13561.5	adh_short_C2	121	360	1.50E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00059	fabG, OAR1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of antibiotics	map01130
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Biotin metabolism	map00780
		Prodigiosin biosynthesis	map00333

Gene Ontology

GO term	Ontology	Name
GO:0016491	Molecular Function	oxidoreductase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.320
SRP064423	SRR2545915	Juvenile tuber	1.400
SRP108465	SRR5643513	five period of Gastrodia elata	2.240
	SRR5643514	five period of Gastrodia elata	4.520
	SRR5643515	five period of Gastrodia elata	4.800
	SRR5643524	five period of Gastrodia elata	11.000
	SRR5643525	five period of Gastrodia elata	3.260
	SRR5643528	five period of Gastrodia elata	1.350
	SRR5643658	five period of Gastrodia elata	1.770
	SRR5643659	five period of Gastrodia elata	1.720
	SRR5643660	five period of Gastrodia elata	1.780
	SRR5643661	five period of Gastrodia elata	1.430
	SRR5643662	five period of Gastrodia elata	1.700
	SRR5643663	five period of Gastrodia elata	2.080
	SRR5643664	five period of Gastrodia elata	3.070
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.160
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.310
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.420
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.350
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.250
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.920
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.520
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.460
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.550
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.500
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.500
SRP279888	Gastro	Gastrodia elata tuber	1.19
	Juven	Juvenile tuber	1.52
	Mother_Gastro	Mother tuber of Gastrodia elata	2.07
	Mother_Juven	Mother tuber of Juvenile	2.71