Gene detail

Detail information of GWHGAAEX008082/evm.TU.scaffold_21.105

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|695003624\|ref\|XP_009386389.1\|	PREDICTED: uncharacterized protein LOC103973523 isoform X1 [Musa acuminata subsp. malaccensis]
trEMBL	tr\|M5WXT5\|M5WXT5_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ11635.1}
TAIR	AT3G47890_1	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000022	2928030	2978719	-

Transcript Sequence
>GWHTAAEX008082 TGTTGCAAATGTATTAATAAATATAATATTAATTATAATTTTACAGAAATGGATGGGAAATCAAAGTGGGACGATGATACGATTTGCTTTAAGGCTTGAAGCCTTAAACAACAACGATCACCTTCATAATAAATAAAGCTGGTAATCTAATCAGCGAAATAAAGGGGCTCAATCATCCCTTAATCCTTTCCGTCTTCTTTCCTAACACTTCGTTCCGATCTTGTCGATTCCTCCGCCGCGCTGAACTTCTACAGAAGAAGGAAATCCTACAACGCCTGCTCACCATTATCCCTCGCAGGCAACGACAATCCTTCGTCACCGTCTCGCTCTGTGCTGTCGCCTATCGAAGAAGATTTCTCTCCTCTTCAGCGTTTGCACTCAGCCCGGCTATTCTCTCTTCCTCTATACATATAGCTATGTGGCTGCCGTAGATGAGAGAGGAGTACGAGTCGGAGTGGCTGTTAAAATTGTGGCTTTTATAGAGGGAAAGGTACCGCGAGACATTATCCGATGGTTCGTAAACGAAACCCTAATCATCAAGCTTTGCTCCATTCCACGGCGGAGCTTCCTCATGTGGAGTCGACATCGGATTCTACAGCCGTGAAGGCCGAGTGCGAGAGGGCGTTGACTGCCCTTCGCCGGGGAAATCACACGAAAGCCCTTCGTCTTATGAAAGACGCGTGCCAGCGTCACGAATCTTCCGCGCTCTTCCACCGCGTTCACAGCACCATCTTCTTCAAGGTTGCATCCTTGCTGGACGATCCCAATACCAAACTCCGGTACCTGCGCAGTGCGATTGACTCTGCCCGCCGCTCTGTCGCACTTTCTCCAAACTCGATTGAATTTGCTCACTTCTATGCAAACCTGCTTTACGAGGCTTCTAATGACGGCCCTGCCTATGATGAAGTAGTTCAGGAGTGCGAGCGTGCTCTAGCCATTGCAGACCCTGTAGATCCAGCTAAGGAAAGCCTTCAGGATGAAAGACAGCAGAAGCTCACTACTGCTGAGGCCCGCATTTCTCATATACAGCAGGAGATACGCTCTCTTATTCAGAAATCCAACATCGCATCACTCTCTACTTGGGTGAAGAATTTAGGCAACGGATCTGGGCGTGAGGATAATATTAGATTAATACCTATGCGCCGCCTGACAGAGGACCCCATGGAAGTCAGAGTTATTCCAGCTCGCCGTCCCAACGAGATTAAGAAGGCAACCAAGACCCCCGAGGAGCGCCGCAAAGAGATTGAAGTACGTGTTGCGGCTGCTATCCTGCTCCAGCACAAATCCAGCTCACCTGCATCTCCTGATGATGATAGCAGAGGTAGTGAGAGGCCTTCATCCTCTGGTAATCGGGAGCGTCGCAGGTCAATTAACTCCAGAAAACTGTCATCATCTACTGAGAAGATGGATCAGGCACGCTCTCATTGGAACTCCATGACCATTCACCAGAAACTTGAGTTCCTATCAGTGAAAGTTTCTGATCTGGAGCAATATGTCTTATCATTAAAGGATAACCTTGCATCAGATGTTCTTTCAGAGGCTCTTACTTTTGTCAAGTCTAATAGTACATGGAAATTTTGGGTTTGCTGTCGCTGCAAAGAGAAATTTAAGAATTCTGATACCCATGTTCAGCATGTCATGCAGGAGCACGTAGGCAGCCTCTCACCCAAGTTGCAATCTGTTTTGCCTCAAGAAGTTGATGTAAAGTGGAATGAGATGCTTTTGAACTGGAGCTGGAAGCCTATTGACGCAGCTTTTTCTGTGACTATGTTAGGAGATGCTCTTAAAAAGGAACATTTGGATGCCAATTACTGTAATGCTAAAGAGGGTGTACTTGAATGCTTAAATGCAAACGATAATTTGGATTCTTCCTCATCAAACTATTATAGAGATTCAGTGACTGGGGAGAATGGGTATGCTATAACAAACAAGGATAATCAAATATCAACCTTTTTTGCTGATTCACCTCAGATATGGCCACTATCTGATGATTTGGAAAGAGCTAAACTTCTTGAAAGGATTCAAGGAATGTTTCAGTTGTTCATTAAACATAAAATTCTTTCTGTTCGCCATCTTAACAAGGTGATTCAATTTGCAATGGAAGATATCAAAGGTTTACCATCTAGTTCACTACTACTGAATAGTAAACTTGACCAGTCACCCATTTGCATTTGTTTTTTGGGTGGACTCCAGCTTAGGAAAGTGCTCAAGTTCTTGCAGGAATTGTCTCAGTCATGTGGCTTTGGCAGATACAGTGAGGTAGATAATGCTGCTGGTGACACACTTAAGACTGATAGTAGTGAATTTCTTGATGGAATCAGTCTATCCAATGATTCTGCTACACTAGTTCTTGATGGTCATTTATTCCTTGCAAAATCTGGTTCTAGAATATCTGACGTATCATCCCTTGTTGATGGTATATATGCCGTTCCTTCTGCTGATGCTATTGTTTCCTGGTTATTTTCTGGTTCATCATACGAGGAAGAAATATCTTCTTGGAATTGTAGGAAAGAAGAGAAATTGCAGTTGTGTATGGAAACCCTTCAGCTTCTTGAGAAGGAGGTTTACCTTTTGCAAAGTATGTCTGAGAGAAAGCTTGAGCATTTGAGCTATGAAGAGGCCTTGCTGGCTGCAGAGAACATATGTCTGGAAGAGTCTAAGAAAAGAGATCCTTCTATGAAGTTTGCTTCTCAAAGTTATGAAGTCGCACTAAGGAAGCGACAGGAAGAACTTATTGCTAGAGATAATGATGCGATTCATACAAGCAATAGACATACAAGCAATAGACTTGAGTTAGATGCTATATCCAATGTTCTCAAGGAATCTCAGGGTTTGAGCGTATCTCAATTTGGGTACGATGAAACTCTATCCAGTGTCACTTCTCTTATGTCTGAGCTGAATTGTGGTAATGATGAGCATAGAATGCATGAGTACAGACAGCAAGCGGATGCCTGTATTGAACTAGCAATTCAGAGACAAAGGGAACATTTATCTGCTGAGCTTAACAAGCTTGACGCAAAGATGATGCATAGTGTGAATGCCATGCATTTTTTGGAAGCAAAGCTTGGCCCTTCTTCTGCTTTTGATTATCGGACATTTATTTTACCTTTGATGAACTCTTTTCTCCGGGTACATTTGGAGTCATTAGTAGATAAAGCTGCTACCGAGAAGTCTGATGCTGCTAGAGAAGCCTTTCTAGCAGAACTTGAGCTTGATGAAAAGAGAAACCTTAAAAAGGAAGCGGATTATCGACAATCAAATGAAAAGATGAAGGATAAAAAAAAGAGCAAAGATTCCAGAAAAAACAAGGACTTGAAGACTACAGGGTACAATGAGCAGCTTATCTTTCACCCTGAAACTGGAGAGCATTTTGAGTTTGTTGCTTCAAATGCTGTGAAGCTTGGGGATGCAGAGGTCAACACAATCGATGAGCAGCTGGAAGATGACGTTGAATTAAAACGCAAAGTGGAGCTTGAGGAAGAAGAAAGAAAGTTGGAAGAAACTTTAGAATATCAAAGGTGGATAGAATATGAAGCAAAGCAGAAACATCTTGCAGATCAATTAAAGAATTTTTCCAAGAATCATCCAGATGTCTTCCAGGAATCATTTGCTACTGATCTAGCTGTAAATATTAGTACTTCAGTTTTAAAAGATCCCAGTCTAGCAGTTATACATAGTGATGCTGATGAAGTTTGCTCAAAGAGCCCACAGTTAGGAGATTTTGATTCTGCTGCTGCAATAAAGGATTGTCAAAATGCTCAATCTAGTGGTGGGCTTAGTGCCTTCTGTGAAGATAAGCTGATTCAAGTACAGAGGGTGGGAGAGTACAATAACATTAGAGAAACTGGTGTTGACGTAATGCAAACTAATTCTTGGAGCTTTCCAACAGAGAATAAATTAGGTGCTGTTAAAGTAAACGGTGTCCATGGATCTGCATCCGCTGAAAAATCTTCCACCATCTCTAAAGTAAAAATGCATAAGAAAATAATTATGCAGTCCAACTCAAAATGCAAACCAGTTGAAGATGCACAAGATGGCTTTGTGCAGTCTAACAGCCAGATTAAACAAGTCAATAATGACTGTTGTTCAGCTCAATTATCTGATAAAATTGCACGAGTTTTGCCACATTGCCAAGAAAATCATTCATATGGGAAGTCATTAAATGGAGATCATTTAAAAATTCAGCCTCTTGAAATTGCAGCTGATGAGTTTCGTGATGGATGTAAAGAAATAGAGACATTCAATTTGCTGCCAGCTGCAGATGATGAAGATGTGAGGTTCCAGGAAGATCTTAAAAAAGCAGTACGCCAAAGCCTTGATTCTTTTCAAGCAGAGAGGAAAATACTGCTGCCTTCTGCCTTGAGCTCGTCTCAACAAATATCTTTAGAGTTCAGGAACTCTATTAAGGAAACTGCTAGTGTTTTCCCTCACAAAGATGTTTATGGTACAGGTCTAACAAATGCAATTGGTGAATATAATTGCTTTCTAAATGTTATTATTCAATCATTGTGGCATTTAAGGAGATTTCAAAAGGAGTTCTTGATGAAAGCTCCAGTGCACGTACATGTTGGGGATCCTTGCGTTGTATGTGCACTACATGATATTTTTATTGCATTGAACAAAGCAACTCGGGATAGCCAAAGAGAAGCTGTTGCCCCTACACATTTGAGGATGGCATTGAGCAATTTATACCCTGACAGCAATTTCTTCCAGCAGGCTCAGATGAACGATGCTTCTGAGGTTTTAGGTGTAATTTTTGATTGCTTGCACAAATCCTTCACATGTGCTGCTCAAGAAGACATGCAATTAGAAAAGCGTAGCCATATGGGGACCTGGGATTGCAGTAGCTTTACTTGCATAGCACATAATCTCTTTGGAATGAACATTTTTGAACAGATGAATTGTTCCAGCTGTGGCATGGAGTCAAGGAATCTCAAATATACATCTTTTTTTCATAATATAAATGCAAGTGCACTCAGAACGATGAAGATTGCATATGCGGGCACTTCATTTGATGAGATTTTAAAAATTGTGGAAATGAATCATCAGCTGCCTTGTGATGTGGAGGCTGGCGGCTGTGGAAAGTTCAATTCTATTTTTCAACTTCTTGCAGCACAGCCACATGTTTTTACAATCATTTTGGGATGGCAGAATACAAATGAAAGTATAGATGACATCTCTGCTACTTTGACAGCTATTACTACAGAACTTGATGTTGGTGTTCTTTACTGTGGTCTCAATCAAGGAAGAAAACACTTTCTGGTTTCAGTGGTATGCTATTATGGGCAACATTACCATTGCTTTGCTTATGAACATGAACATTGGGTTATGTATGATGACCAGACAGTCAAGGTTATAGGTGGTTGGAATGATGTTCTTAAAATGTGTGAAAAGGGGCATTTGCAACCGCAAGTACTTTTTTTTGAGGCTGGCAATTAGATGTGAGAGAGGATCTCATCCTAGCATTTGAGACTACGCAGGTATGCAGGCTGTGTAAGCCGCTGTTATCTTCTGGATTCCACTAACCTTTATTTTAAGGCCGTTAAGATCTCTAGGCGCATTATTGGGCTAGCTTTCTTGCAATTCTTTCTTGCCTTCATACTTTTTTCATCATCTTCGGCCGCACTGAGCAACTCCACGCGCCTCCAGCAAAGGAAGCCGTCTTCTTCCTCCATCCCCCTGCCCGGTTAGGTGATGCCGTGTGCTATATTGCAAATCAGGGTGCTAATTTTGATGCAGATGGCGGAAGAGTTATTTTACTGTAGTATTTTCTAGTGGTTTCTGTTCATAATATACATATTTCATAGGGAACATTGACCTTTCATATAACTGCCATTTTCTCAAAGTTCTGTGTTCGTGACAGTAAAACCAGATGCAGGCAGGCCTTCGTCTATATATATGAAGCTGAAATTATTCTTGGTATTTACCTTTGTTTTAATTATTTTTCATTCATGATGCCCTTTTATTCTCTTTGCATCTACCCTGTAACCTTGTGTAACAACTTGTTTACCAGTTGAAATAAGCGGTCCTTTTGTTTGCACTGCCAAGTCTGCACTTTAAGGCTTTTCTACTTGTTTGCTTAATTCTATCTTTATGCCCACCCTCTTATTGCAG

Network for GWHGAAEX008082

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04781.11	DUF627	37	144	9.30E-29
PF04780.11	DUF629	302	817	9.40E-146
PF00443.28	UCH	1313	1638	9.70E-20

Protein Sequence

>GWHPAAEX008082
MVRKRNPNHQALLHSTAELPHVESTSDSTAVKAECERALTALRRGNHTKALRLMKDACQRHESSALFHRVHSTIFFKVASLLDDPNTKLRYLRSAIDSARRSVALSPNSIEFAHFYANLLYEASNDGPAYDEVVQECERALAIADPVDPAKESLQDERQQKLTTAEARISHIQQEIRSLIQKSNIASLSTWVKNLGNGSGREDNIRLIPMRRLTEDPMEVRVIPARRPNEIKKATKTPEERRKEIEVRVAAAILLQHKSSSPASPDDDSRGSERPSSSGNRERRRSINSRKLSSSTEKMDQARSHWNSMTIHQKLEFLSVKVSDLEQYVLSLKDNLASDVLSEALTFVKSNSTWKFWVCCRCKEKFKNSDTHVQHVMQEHVGSLSPKLQSVLPQEVDVKWNEMLLNWSWKPIDAAFSVTMLGDALKKEHLDANYCNAKEGVLECLNANDNLDSSSSNYYRDSVTGENGYAITNKDNQISTFFADSPQIWPLSDDLERAKLLERIQGMFQLFIKHKILSVRHLNKVIQFAMEDIKGLPSSSLLLNSKLDQSPICICFLGGLQLRKVLKFLQELSQSCGFGRYSEVDNAAGDTLKTDSSEFLDGISLSNDSATLVLDGHLFLAKSGSRISDVSSLVDGIYAVPSADAIVSWLFSGSSYEEEISSWNCRKEEKLQLCMETLQLLEKEVYLLQSMSERKLEHLSYEEALLAAENICLEESKKRDPSMKFASQSYEVALRKRQEELIARDNDAIHTSNRHTSNRLELDAISNVLKESQGLSVSQFGYDETLSSVTSLMSELNCGNDEHRMHEYRQQADACIELAIQRQREHLSAELNKLDAKMMHSVNAMHFLEAKLGPSSAFDYRTFILPLMNSFLRVHLESLVDKAATEKSDAAREAFLAELELDEKRNLKKEADYRQSNEKMKDKKKSKDSRKNKDLKTTGYNEQLIFHPETGEHFEFVASNAVKLGDAEVNTIDEQLEDDVELKRKVELEEEERKLEETLEYQRWIEYEAKQKHLADQLKNFSKNHPDVFQESFATDLAVNISTSVLKDPSLAVIHSDADEVCSKSPQLGDFDSAAAIKDCQNAQSSGGLSAFCEDKLIQVQRVGEYNNIRETGVDVMQTNSWSFPTENKLGAVKVNGVHGSASAEKSSTISKVKMHKKIIMQSNSKCKPVEDAQDGFVQSNSQIKQVNNDCCSAQLSDKIARVLPHCQENHSYGKSLNGDHLKIQPLEIAADEFRDGCKEIETFNLLPAADDEDVRFQEDLKKAVRQSLDSFQAERKILLPSALSSSQQISLEFRNSIKETASVFPHKDVYGTGLTNAIGEYNCFLNVIIQSLWHLRRFQKEFLMKAPVHVHVGDPCVVCALHDIFIALNKATRDSQREAVAPTHLRMALSNLYPDSNFFQQAQMNDASEVLGVIFDCLHKSFTCAAQEDMQLEKRSHMGTWDCSSFTCIAHNLFGMNIFEQMNCSSCGMESRNLKYTSFFHNINASALRTMKIAYAGTSFDEILKIVEMNHQLPCDVEAGGCGKFNSIFQLLAAQPHVFTIILGWQNTNESIDDISATLTAITTELDVGVLYCGLNQGRKHFLVSVVCYYGQHYHCFAYEHEHWVMYDDQTVKVIGGWNDVLKMCEKGHLQPQVLFFEAGN

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016579	Biological Process	protein deubiquitination
GO:0036459	Molecular Function	thiol-dependent ubiquitinyl hydrolase activity
GO:0005515	Molecular Function	protein binding
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	29.930
SRP064423	SRR2545915	Juvenile tuber	29.820
SRP108465	SRR5643513	five period of Gastrodia elata	18.910
	SRR5643514	five period of Gastrodia elata	18.950
	SRR5643515	five period of Gastrodia elata	20.490
	SRR5643524	five period of Gastrodia elata	19.400
	SRR5643525	five period of Gastrodia elata	24.980
	SRR5643528	five period of Gastrodia elata	22.470
	SRR5643658	five period of Gastrodia elata	22.020
	SRR5643659	five period of Gastrodia elata	20.820
	SRR5643660	five period of Gastrodia elata	25.340
	SRR5643661	five period of Gastrodia elata	24.250
	SRR5643662	five period of Gastrodia elata	20.600
	SRR5643663	five period of Gastrodia elata	22.840
	SRR5643664	five period of Gastrodia elata	22.810
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	22.910
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.770
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.970
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.660
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	25.170
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	25.400
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	21.720
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	22.120
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	25.220
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	23.050
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	23.050
SRP279888	Gastro	Gastrodia elata tuber	26.44
	Juven	Juvenile tuber	23.27
	Mother_Gastro	Mother tuber of Gastrodia elata	26.68
	Mother_Juven	Mother tuber of Juvenile	30.39