Detail information of GWHGAAEX008083/evm.TU.scaffold_21.106


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16012.00E-27GATA-4/5/6 transcription factors
nrgi|743759717|ref|XP_010933442.1|2.27E-56PREDICTED: GATA transcription factor 28-like isoform X2 [Elaeis guineensis]
Swissprottr|Q8GXL7|GAT24_ARATH6.00E-30GATA transcription factor 24
trEMBLtr|M0T449|M0T449_MUSAM1.00E-47Protein argonaute {ECO:0000256|RuleBase:RU361178}
TAIRAT1G516002.00E-27ZIM-LIKE 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002230148983061608+
Transcript Sequence

Network for GWHGAAEX008083

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06200.13tify1141461.10E-13
PF06203.13CCT1792102.40E-11
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyTify

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.540
SRR2545915Juvenile tuber14.930
SRP108465SRR5643513five period of Gastrodia elata17.440
SRR5643514five period of Gastrodia elata15.810
SRR5643515five period of Gastrodia elata18.470
SRR5643524five period of Gastrodia elata14.800
SRR5643525five period of Gastrodia elata11.090
SRR5643528five period of Gastrodia elata16.410
SRR5643658five period of Gastrodia elata22.290
SRR5643659five period of Gastrodia elata41.900
SRR5643660five period of Gastrodia elata32.910
SRR5643661five period of Gastrodia elata17.460
SRR5643662five period of Gastrodia elata49.780
SRR5643663five period of Gastrodia elata45.930
SRR5643664five period of Gastrodia elata48.690
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.150
SRR6049655Rhizomagastrodiae_C368-T10_good_117.330
SRR6049656Rhizomagastrodiae_C368-T07_good_110.060
SRR6049657Rhizomagastrodiae_C368-T07_good_113.510
SRR6049658Rhizomagastrodiae_C368-T04_good_114.820
SRR6049659Rhizomagastrodiae_C368-T04_good_116.590
SRR6049660Rhizomagastrodiae_C368-T01_good_110.960
SRR6049661Rhizomagastrodiae_C368-T04_good_112.210
SRR6049662Rhizomagastrodiae_C368-T01_good_19.060
SRR6049663Rhizomagastrodiae_C368-T01_good_114.820
SRR6049664Rhizomagastrodiae_C368-T10_good_18.040
SRR6049665Rhizomagastrodiae_C368-T10_good_18.040
SRP279888GastroGastrodia elata tuber 24.63
JuvenJuvenile tuber18.40
Mother_GastroMother tuber of Gastrodia elata 17.03
Mother_JuvenMother tuber of Juvenile 31.99