Detail information of GWHGAAEX008085/evm.TU.scaffold_21.108


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16015.00E-21GATA-4/5/6 transcription factors
nrgi|672200686|ref|XP_008777941.1|9.93E-39PREDICTED: GATA transcription factor 28-like [Phoenix dactylifera]
Swissprottr|Q8H1G0|GAT28_ARATH5.00E-22GATA transcription factor 28
trEMBLtr|A0A059Q171|A0A059Q171_9POAL8.00E-32Transcription factor {ECO:0000313|EMBL:AGT17073.1}
TAIRAT4G244705.00E-21GATA-type zinc finger protein with TIFY domain

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002230810283096702+
Transcript Sequence

Network for GWHGAAEX008085

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00320.26GATA1071432.60E-12
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-GATA

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms9.470
SRR2545915Juvenile tuber11.180
SRP108465SRR5643513five period of Gastrodia elata8.950
SRR5643514five period of Gastrodia elata8.380
SRR5643515five period of Gastrodia elata7.560
SRR5643524five period of Gastrodia elata7.860
SRR5643525five period of Gastrodia elata11.010
SRR5643528five period of Gastrodia elata10.430
SRR5643658five period of Gastrodia elata12.560
SRR5643659five period of Gastrodia elata12.890
SRR5643660five period of Gastrodia elata15.930
SRR5643661five period of Gastrodia elata14.490
SRR5643662five period of Gastrodia elata12.070
SRR5643663five period of Gastrodia elata13.860
SRR5643664five period of Gastrodia elata17.260
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.500
SRR6049655Rhizomagastrodiae_C368-T10_good_18.390
SRR6049656Rhizomagastrodiae_C368-T07_good_16.770
SRR6049657Rhizomagastrodiae_C368-T07_good_110.220
SRR6049658Rhizomagastrodiae_C368-T04_good_16.050
SRR6049659Rhizomagastrodiae_C368-T04_good_17.290
SRR6049660Rhizomagastrodiae_C368-T01_good_16.230
SRR6049661Rhizomagastrodiae_C368-T04_good_16.680
SRR6049662Rhizomagastrodiae_C368-T01_good_18.080
SRR6049663Rhizomagastrodiae_C368-T01_good_16.860
SRR6049664Rhizomagastrodiae_C368-T10_good_15.950
SRR6049665Rhizomagastrodiae_C368-T10_good_15.950
SRP279888GastroGastrodia elata tuber 14.12
JuvenJuvenile tuber8.20
Mother_GastroMother tuber of Gastrodia elata 10.33
Mother_JuvenMother tuber of Juvenile 11.82