Gene detail

Detail information of GWHGAAEX008090/evm.TU.scaffold_21.114

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1870	2.00E-12	Ubiquitin C-terminal hydrolase
nr	gi\|573957462\|ref\|XP_006660943.1\|	4.98E-15	PREDICTED: uncharacterized protein LOC102715692 [Oryza brachyantha]
trEMBL	tr\|J3MZW1\|J3MZW1_ORYBR	2.00E-15	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB09G25400.1}
TAIR	AT3G45020	2.00E-12	Ribosomal L18p/L5e family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000022	3142279	3144072	+

Transcript Sequence
>GWHTAAEX008090 GAAATATTTTTAAGTGGTTATTTTTATATATAAATCTAATGTCAAATCCAAATATGAAAGATAAGTAAACCTCTAAAATACTATCATAATGATTTTGAAATTAAAAACTAATTAAAAAGGTAAGTGTCAAATATTTACTTGGTGGAGATGAAGGGAGTAGATCTTTGATGAACTCCTCTAGTATTACTACTATAGTTGTCCTCACAAATTTCAGCTTTTACATTATTTTATCTTCTCAAGGCTTTGTAATCTTAAGGAACAATATATGTGGAGCTAAATGGACTTAATTTTGTAAATGATGAATTAATATGAATGAATGCATACTGATTTCTTCTGTTTGTTGATTGTATCACTTATTTATCATTAATTAACTGCTCAATAGGGTGATGCGGCTCCAAGAGCTTAATGTTGGATTAATTCACGCTAAGCCAACACCGAGTTCTGATAACATCTACTGATAGCTATAGCTAGAGTTAAATGCAGCAATGCATATTTTAAGTTATCTCATTTAATGTCTTGTTTGCTAATAAAATTTGAATCATTAATCCATCAAAAGTTCAAATCCAATAGTTCAAAAAAAAAACTTCACTAAGAATGATAGTGTGGCTCAATTATGGATGAAAAATCTTTTTGTAAACCTTAGAAGTATGGCATTGCCTTGTGCTTTATAATTATGTGATTTAGGTGTTTTCTTAAAGTAAGAAGAGTACAACCTTAACAAGTTAAGTAATGCCAGTCATTTGCTGTGTTGGTAAAGCCGTGGACCAAGCAGGAATTGACAATGGCTTCCCCTTACAGTGTCAGATTGGGAGTATGCTGATTTTGGCATCAAATTGTTGCGAAGTCGGCGTCAAAGCAGGACAAAGCCAGAGACAAAACTGGACTAAGCGATTGGTTTTTGCGTGGAGCGGGGTCGGTACAATGAGATTACACCCAATTCAGTTGTAATCTTGTAATCGGAAATTTGACGCTTTTTTCTGTGCAACACCTAATAATTTAAACTACTTAAAGAATTTTTACTGCCAACTACAAACTTAACTGCTCTTAAATAACAACTCTAAAAGAGTTAAAATATGAGTCTCTAAATCCTAAAAGGAAAGTACTAAGGGGGAGGTGCTCCGGCTATGGCCCTCGTGCGCGCCTGAGGCGAAGAGATGCGTCCTCCGCCTCTTCATCTCTCTCAAGTACGTGACTGCGAACGTGGTAGATTGGCACGACAGAAGGGTAATCATGACAGCTTTATCGGTGGAAAAGCCTGTCAAGGAAGGGCTATCCTACACCGATTCTGCAACTTCAAGGCCTTGGCGGCCGTCGACAAGGTACTTGTTATGAGACTCAAGTTTCACAGTCTCGTCGATGATCTCATCCATGCCAACACCCATAAAAAGGTCCAGAAGAAGTGTTTCATGAACATAGTCAAGGTATGGGCTATTCTCAATGCCATTCGCTCCCGTGGAATCAATCTTGTCCTCATACTCGATTGCACTTATTAAGCCTCGTCAAAATCGAAAACTTAGCCTGTTATTGTAATATCTTTGATGAAATTCCTGCAATGAGTTTTGTAAGCTATTCTCAATGTTGCGATGCCATTAATCCTAAAGTTTTTAGCGTGATATGCTCGATGAAAACATTGAGAAATTTTGTGTGATAGAATTGGTGTTAGTTGTTGTTGAGCATAAGGTGTTCTATTAGATTACTGTGAGAAGTTTTTCTTGCAATAGCAATCTTTATGAGATTTATCAATATAATTTTCTGCATCTCATTTTCATTATTTTTTTAAATTGTTAAAGCATT

Network for GWHGAAEX008090

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.160
SRP064423	SRR2545915	Juvenile tuber	1.850
SRP108465	SRR5643513	five period of Gastrodia elata	0.310
	SRR5643514	five period of Gastrodia elata	0.500
	SRR5643515	five period of Gastrodia elata	0.500
	SRR5643524	five period of Gastrodia elata	0.780
	SRR5643525	five period of Gastrodia elata	0.300
	SRR5643528	five period of Gastrodia elata	0.180
	SRR5643658	five period of Gastrodia elata	0.580
	SRR5643659	five period of Gastrodia elata	0.770
	SRR5643660	five period of Gastrodia elata	0.870
	SRR5643661	five period of Gastrodia elata	0.810
	SRR5643662	five period of Gastrodia elata	0.360
	SRR5643663	five period of Gastrodia elata	0.940
	SRR5643664	five period of Gastrodia elata	0.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.340
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.090
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.600
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.480
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.660
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.450
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.520
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.390
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.230
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.170
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.170
SRP279888	Gastro	Gastrodia elata tuber	2.68
	Juven	Juvenile tuber	3.16
	Mother_Gastro	Mother tuber of Gastrodia elata	1.91
	Mother_Juven	Mother tuber of Juvenile	3.76