Detail information of GWHGAAEX008092/evm.TU.scaffold_21.117


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG25671.00E-65Uncharacterized conserved protein
nrgi|672167672|ref|XP_008803807.1|1.65E-71PREDICTED: H/ACA ribonucleoprotein complex subunit 1-like isoform X2 [Phoenix dactylifera]
trEMBLtr|U5DEP1|U5DEP1_AMBTC8.00E-72Uncharacterized protein {ECO:0000313|EMBL:ERN18878.1}
TAIRAT3G070301.00E-65Alba DNA/RNA-binding protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002232107253258197+
Transcript Sequence

Network for GWHGAAEX008092

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01918.20Alba19802.40E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms156.520
SRR2545915Juvenile tuber156.610
SRP108465SRR5643513five period of Gastrodia elata116.430
SRR5643514five period of Gastrodia elata106.480
SRR5643515five period of Gastrodia elata109.830
SRR5643524five period of Gastrodia elata101.810
SRR5643525five period of Gastrodia elata198.800
SRR5643528five period of Gastrodia elata139.760
SRR5643658five period of Gastrodia elata144.570
SRR5643659five period of Gastrodia elata204.780
SRR5643660five period of Gastrodia elata222.390
SRR5643661five period of Gastrodia elata218.640
SRR5643662five period of Gastrodia elata263.550
SRR5643663five period of Gastrodia elata227.150
SRR5643664five period of Gastrodia elata305.370
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_156.320
SRR6049655Rhizomagastrodiae_C368-T10_good_135.210
SRR6049656Rhizomagastrodiae_C368-T07_good_161.020
SRR6049657Rhizomagastrodiae_C368-T07_good_165.940
SRR6049658Rhizomagastrodiae_C368-T04_good_160.130
SRR6049659Rhizomagastrodiae_C368-T04_good_167.870
SRR6049660Rhizomagastrodiae_C368-T01_good_164.160
SRR6049661Rhizomagastrodiae_C368-T04_good_157.020
SRR6049662Rhizomagastrodiae_C368-T01_good_154.150
SRR6049663Rhizomagastrodiae_C368-T01_good_160.910
SRR6049664Rhizomagastrodiae_C368-T10_good_161.310
SRR6049665Rhizomagastrodiae_C368-T10_good_161.310
SRP279888GastroGastrodia elata tuber 189.52
JuvenJuvenile tuber98.60
Mother_GastroMother tuber of Gastrodia elata 41.51
Mother_JuvenMother tuber of Juvenile 55.59