Gene detail

Detail information of GWHGAAEX008093/evm.TU.scaffold_21.118

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|340787855\|ref\|YP_004753320.1\|	5.00E-48	peptidyl prolyl 4-hydroxylase-like protein subunit alpha [Collimonas fungivorans Ter331]
KOG	KOG1591	1.00E-139	Prolyl 4-hydroxylase alpha subunit
nr	gi\|694998326\|ref\|XP_009403981.1\|	1.44E-155	PREDICTED: probable prolyl 4-hydroxylase 6 isoform X1 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q8L970\|P4H7_ARATH	6.00E-140	Probable prolyl 4-hydroxylase 7 (Precursor)
trEMBL	tr\|M0RZD1\|M0RZD1_MUSAM	2.00E-155	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P12730_001}
TAIR	AT3G28480	1.00E-139	Oxoglutarate/iron-dependent oxygenase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000022	3259756	3265033	+

Transcript Sequence
>GWHTAAEX008093 AAATAAATTAAAAAAAAAAAAGATTTCAGTGCATTAAGATGAGACACCTCTCCCCCGTTCTTTTTATTCACAAACCCTGCTCTGTTGTTCTTCGCGCTACATGAAGATGACTTTCAGCCGTCCCTCTTTTTCTTTTCTTTCGACTTTCGTCTTTATTTCCGTCTTCAGCGGTGGATCTCTGGTCAGAGCCGATTCGGTGCCCTTCGATCCAACTAAAGTCACCCAACTCTCATGGAATCCGAGGGCGTTCTTGTACAAGGGGTTCCTCTCCTACGAAGAATGCGACCACCTGATTGTTCTGGCTAAGAATAAGCTGGAGAAATCCATGGTTGCGGATAATAATTCTGGGAAGAGTGTGATGAGCGAGGTGCGGACAAGCTCCGGTATGTTTCTTGAGAAACGTCAGGATGAAATTGTGGAAGGAATAGAGAAACGGATCGCGGCCTGGACATTCCTTCCGGAGAGAAACGGGGAGTCAATCCAGATACTGCACTACGAGAACGGGCAGAAGTACGAGCCGCACTACGACTACTTCCACGACAAAGCGAACCAAGCTTTGGGGGGGCATCGAGCGGCCACCGTTCTGATGTACCTTTCGAACGTGAGCAAGGGCGGGGAAACAGTCTTCCCCAACTCCATGGACAAATTAGGGCAGGCGAAGAAGGAAGAAGACGGCTGGTCGGAGTGCGCCAAGAATGGCTACGCGGTGAAGCCCGCCAAGGGCGACGCCCTGCTCTTCTTTAGCCTGAATCTAGACGGAACCACCGATGCCGACAGCCTGCACGCGAGCTGCCCCGTCATGGAGGGCGAGAAGTGGTCGGCCACCAAGTGGATCCACGTCAGCTCCTTTGAGAATTCCCGCCGCTCTACGGCCCGGGAATGCTCCGACGAGAACGATCTCTGCCCCCGCTGGGCCGCCCTCGGCGAATGCACGAAGAATCATCTCTATATGGTCGGCTCCCTCAAATCCCCCGGTTACTGCCGCAAGAGCTGCAATCTTTGCTCTTCCTAATCATTCTCTCAACTTCATACTTCTATAAATATATGTTAATAAGATTTTGGATGCATGAAACTGAAATAAAAGCTTCATTCACATTTATAAATGCTATCTTCTTTAATAAGCTGCTTTCTTGTAACTCACAGGCGTTCAATTCCGCTTGGTTTCTTGAATACCCGAAAGAGCTGCTTTGTCTGAGAATGATTATTTTTCCATTGTTGTTATGGTATTATAACTAGCAGAGAAGAAAGATAATTCCTACCAAAGTATAAAAATCTCTTACATTTTGAATAAATGCATTCAAAATAAGTAGATGATTTTAATGCAATCTGCTCTACCACTTATAAGAATATAGATACAATTTGAGTTCGGCTACAGCAACAAATAGAGATTGCCCCTTCTTCTTCCCTGCTGGTTATGCTTCATGGGGATTATGCATTTCACATCTGAGCATAAGTTCATCCAGCCTATAGTCATCGGGTTCATCATAAACTGCTCTTAAATATGTATAATTATGATTTTGAATTTGAACTCTTAATAACTCAAGAATTCAAATGATCATATACGTTATTCTCTCCAGAGATTATCCTCAGAATGCAGGCTTGATGCACCAAAAAATTGTTGCAAGAAATGGCAGTGTTGTTTCTTATATTTATATTGATTATGGCCTGGTTTAAATACCAGTTTTAGTGATTATCCTTCTTCTTCTCTATTCTCTCAGCTCTAAATAACATTGCAGCAACGAGGGAATAATAATCATTATGACTTCAAAATACCAATTGATATTGCACCTTCATCTGAAAGATTTGAGGATCATCATTTCACATACGAGCATAAATTCATCCAGCCCATACTCATCAGAGTACAGTCTTGGTGCCGATTTCTCCGACTCAACCCTCAAAACGTAATACGAATAGTAGACAAAAATGCGCAAAGGAAGGAAGAACCGGTCATTTATGACATTTATGCAAATAGAGAGCCAAAGGCTACGGTGCGCCATAATGCCCATCTAACGAATGCCAGGCGCTACAGCGCACCATAATGCCCATCCAGTGAAAGCCACAAGCTACAACGTACCTTAAGGAAAATGCAGAGCTCATTTAATGAAGAAAGAGCCTTGGGTGCCGCGGCGCGCCCCATTGTCCGCTGTTCTGAAACGAATGATTCTAAGGGGTAGAATAATTGAGGCAGTGTATTTAATGAATTCTTTCAACTCCCAAAAAATTATTGAGAG

Network for GWHGAAEX008093

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13640.5	2OG-FeII_Oxy_3	128	246	2.50E-20
PF01549.23	ShK	260	301	0.00054

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00472	P4HA	Metabolic pathways	map01100
K00472	P4HA	Arginine and proline metabolism	map00330

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0031418	Molecular Function	L-ascorbic acid binding
GO:0016491	Molecular Function	oxidoreductase activity
GO:0005506	Molecular Function	iron ion binding
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.310
SRP064423	SRR2545915	Juvenile tuber	12.430
SRP108465	SRR5643513	five period of Gastrodia elata	35.760
	SRR5643514	five period of Gastrodia elata	45.000
	SRR5643515	five period of Gastrodia elata	39.790
	SRR5643524	five period of Gastrodia elata	48.760
	SRR5643525	five period of Gastrodia elata	55.030
	SRR5643528	five period of Gastrodia elata	71.660
	SRR5643658	five period of Gastrodia elata	53.490
	SRR5643659	five period of Gastrodia elata	48.140
	SRR5643660	five period of Gastrodia elata	53.240
	SRR5643661	five period of Gastrodia elata	57.210
	SRR5643662	five period of Gastrodia elata	49.880
	SRR5643663	five period of Gastrodia elata	49.730
	SRR5643664	five period of Gastrodia elata	58.270
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	20.790
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.170
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	19.980
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	16.420
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.520
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.720
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.700
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.730
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	30.220
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.820
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	32.650
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	32.650
SRP279888	Gastro	Gastrodia elata tuber	36.13
	Juven	Juvenile tuber	29.76
	Mother_Gastro	Mother tuber of Gastrodia elata	81.37
	Mother_Juven	Mother tuber of Juvenile	52.06