Detail information of GWHGAAEX008098/evm.TU.scaffold_21.125
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|291300775|ref|YP_003512053.1| | 5.00E-27 | 2OG-Fe(II) oxygenase [Stackebrandtia nassauensis DSM 44728] |
| KOG | KOG2731 | 6.00E-90 | DNA alkylation damage repair protein |
| nr | gi|743782221|ref|XP_010921089.1| | 1.76E-105 | PREDICTED: alpha-ketoglutarate-dependent dioxygenase abh1 [Elaeis guineensis] |
| Swissprot | tr|Q9SA98|ALKBH_ARATH | 6.00E-09 | Alpha-ketoglutarate-dependent dioxygenase alkB |
| trEMBL | tr|M5WUR8|M5WUR8_PRUPE | 3.00E-100 | Uncharacterized protein {ECO:0000313|EMBL:EMJ17434.1} |
| TAIR | AT3G14160 | 6.00E-90 | 2-oxoglutarate-dependent dioxygenase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000022 | 3446941 | 3501587 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008098
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13532.5 | 2OG-FeII_Oxy_2 | 114 | 327 | 8.40E-45 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 33.070 |
| SRR2545915 | Juvenile tuber | 35.910 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.050 |
| SRR5643514 | five period of Gastrodia elata | 18.210 | |
| SRR5643515 | five period of Gastrodia elata | 18.570 | |
| SRR5643524 | five period of Gastrodia elata | 17.600 | |
| SRR5643525 | five period of Gastrodia elata | 17.370 | |
| SRR5643528 | five period of Gastrodia elata | 16.910 | |
| SRR5643658 | five period of Gastrodia elata | 15.290 | |
| SRR5643659 | five period of Gastrodia elata | 19.090 | |
| SRR5643660 | five period of Gastrodia elata | 18.390 | |
| SRR5643661 | five period of Gastrodia elata | 18.340 | |
| SRR5643662 | five period of Gastrodia elata | 24.480 | |
| SRR5643663 | five period of Gastrodia elata | 21.480 | |
| SRR5643664 | five period of Gastrodia elata | 21.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.680 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.730 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.850 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.080 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.010 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.800 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.020 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.020 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.36 |
| Juven | Juvenile tuber | 21.53 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 21.49 | |
| Mother_Juven | Mother tuber of Juvenile | 21.90 |