Detail information of GWHGAAEX008100/evm.TU.scaffold_21.126
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672178625|ref|XP_008809450.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g20230 [Phoenix dactylifera] |
| Swissprot | tr|Q9LNU6|PPR53_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g20230 |
| trEMBL | tr|M5XQP7|M5XQP7_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ28402.1} |
| TAIR | AT1G20230 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000022 | 3561245 | 3564258 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008100
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 160 | 190 | 2.20E-06 |
| PF01535.19 | PPR | 265 | 294 | 0.58 |
| PF13041.5 | PPR_2 | 297 | 344 | 3.80E-08 |
| PF01535.19 | PPR | 372 | 399 | 0.27 |
| PF01535.19 | PPR | 400 | 426 | 0.00057 |
| PF01535.19 | PPR | 436 | 464 | 0.0078 |
| PF01535.19 | PPR | 474 | 497 | 0.048 |
| PF14432.5 | DYW_deaminase | 572 | 696 | 6.00E-42 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.740 |
| SRR2545915 | Juvenile tuber | 0.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.400 |
| SRR5643514 | five period of Gastrodia elata | 1.510 | |
| SRR5643515 | five period of Gastrodia elata | 1.730 | |
| SRR5643524 | five period of Gastrodia elata | 1.270 | |
| SRR5643525 | five period of Gastrodia elata | 0.310 | |
| SRR5643528 | five period of Gastrodia elata | 0.050 | |
| SRR5643658 | five period of Gastrodia elata | 0.110 | |
| SRR5643659 | five period of Gastrodia elata | 2.800 | |
| SRR5643660 | five period of Gastrodia elata | 2.170 | |
| SRR5643661 | five period of Gastrodia elata | 2.760 | |
| SRR5643662 | five period of Gastrodia elata | 2.400 | |
| SRR5643663 | five period of Gastrodia elata | 2.530 | |
| SRR5643664 | five period of Gastrodia elata | 2.510 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.870 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.140 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.790 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.190 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.990 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.880 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.590 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.300 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.050 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.810 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.810 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.86 |
| Juven | Juvenile tuber | 1.20 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.57 | |
| Mother_Juven | Mother tuber of Juvenile | 0.53 |