Detail information of GWHGAAEX008103/evm.TU.scaffold_21.129
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|269839792|ref|YP_003324485.1| | 3.00E-11 | Kelch repeat-containing protein [Thermobaculum terrenum ATCC BAA-798] |
| KOG | KOG1072 | 0 | FOG: Kelch repeat |
| nr | gi|743825135|ref|XP_010932959.1| | 0 | PREDICTED: F-box/kelch-repeat protein At1g55270 [Elaeis guineensis] |
| Swissprot | tr|Q93W93|FBK22_ARATH | 0 | F-box/kelch-repeat protein At1g55270 |
| trEMBL | tr|K4ASG3|K4ASG3_SOLLC | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g005970.2.1} |
| TAIR | AT1G55270 | 0 | Galactose oxidase/kelch repeat superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000022 | 3570877 | 3575471 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008103
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00646.32 | F-box | 78 | 120 | 1.20E-07 |
| PF01344.24 | Kelch_1 | 173 | 213 | 0.00015 |
| PF01344.24 | Kelch_1 | 217 | 262 | 4.60E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.970 |
| SRR2545915 | Juvenile tuber | 8.800 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.230 |
| SRR5643514 | five period of Gastrodia elata | 5.620 | |
| SRR5643515 | five period of Gastrodia elata | 5.060 | |
| SRR5643524 | five period of Gastrodia elata | 4.850 | |
| SRR5643525 | five period of Gastrodia elata | 6.770 | |
| SRR5643528 | five period of Gastrodia elata | 5.730 | |
| SRR5643658 | five period of Gastrodia elata | 5.980 | |
| SRR5643659 | five period of Gastrodia elata | 6.310 | |
| SRR5643660 | five period of Gastrodia elata | 6.380 | |
| SRR5643661 | five period of Gastrodia elata | 6.330 | |
| SRR5643662 | five period of Gastrodia elata | 7.480 | |
| SRR5643663 | five period of Gastrodia elata | 6.750 | |
| SRR5643664 | five period of Gastrodia elata | 6.060 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.240 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.430 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.490 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.400 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.800 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.900 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.170 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.570 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.890 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.650 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.650 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.46 |
| Juven | Juvenile tuber | 4.49 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.78 | |
| Mother_Juven | Mother tuber of Juvenile | 3.31 |